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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484479 (140 seq.)
>W1711409530
MGOU01000043
Bacillota
Clostridiales bacterium GWD2_32_19 [MGOU]
15042
14972
-
Cys
GCA
[ENA]
¡û
>W1711409561
MGOV01000036
Bacillota
Clostridiales bacterium GWD2_32_59 [MGOV]
14047
13977
-
Cys
GCA
[ENA]
¡û
>W1711409582
MGOW01000020
Bacillota
Clostridiales bacterium GWE2_32_10 [MGOW]
6275
6345
+
Cys
GCA
[ENA]
¡û
>W1711424731
MIEH01000006
Bacillota
Merdimonas faecis BR31 [MIEH]
103386
103315
-
Cys
GCA
[ENA]
¡û
>W1711462811
MJID01000029
Bacillota
Roseburia sp. 499 [MJID]
624
552
-
Cys
GCA
[ENA]
¡û
>W1711462819
MJID01000040
Bacillota
Roseburia sp. 499 [MJID]
316
244
-
Cys
GCA
[ENA]
¡û
>W1711462986
MJIG01000007
Bacillota
Anaerostipes sp. 992a [MJIG]
3393
3463
+
Cys
GCA
[ENA]
¡û
>W1711462989
MJIG01000007
Bacillota
Anaerostipes sp. 992a [MJIG]
18363
18433
+
Cys
GCA
[ENA]
¡û
>WENV180043253
LQAH01015955
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
558
488
-
Cys
GCA
[ENA]
¢þ
>WENV180131327
OATG01008906
[OATG] human gut metagenome; faeces
1730
1660
-
Cys
GCA
[ENA]
¢þ
>WENV180162607
OAVH01000006
[OAVH] human gut metagenome; faeces
105587
105658
+
Cys
GCA
[ENA]
¢þ
>WENV180162608
OAVH01000006
[OAVH] human gut metagenome; faeces
108600
108671
+
Cys
GCA
[ENA]
¢þ
>WENV180235209
OBCT01006900
[OBCT] human gut metagenome; human gut
944
874
-
Cys
GCA
[ENA]
¢þ
>WENV180235867
OBCU01002644
[OBCU] human gut metagenome; human gut
200
130
-
Cys
GCA
[ENA]
¢þ
>WENV180306579
OBJP01001449
[OBJP] human gut metagenome; human gut
393
464
+
Cys
GCA
[ENA]
¢þ
>WENV180306580
OBJP01001449
[OBJP] human gut metagenome; human gut
2816
2887
+
Cys
GCA
[ENA]
¢þ
>WENV180341139
OBLI01083505
[OBLI] pig gut metagenome; faeces
683
613
-
Cys
GCA
[ENA]
¢þ
>WENV180455067
OBXO01000335
[OBXO] human gut metagenome; faeces
446
516
+
Cys
GCA
[ENA]
¢þ
>WENV180455292
OBXO01001045
[OBXO] human gut metagenome; faeces
3570
3498
-
Cys
GCA
[ENA]
¢þ
>WENV180710398
ODFM01001221
[ODFM] human metagenome; G_DNA_Stool
3753
3682
-
Cys
GCA
[ENA]
¢þ
>WENV180848739
ODKU01023653
[ODKU] human metagenome; G_DNA_Stool
337
408
+
Cys
GCA
[ENA]
¢þ
>WENV180867586
ODLK01004538
[ODLK] human metagenome; G_DNA_Stool
2385
2314
-
Cys
GCA
[ENA]
¢þ
>WENV180965762
ODUP01007582
[ODUP] human metagenome; G_DNA_Stool
2385
2314
-
Cys
GCA
[ENA]
¢þ
>WENV181056980
ODYJ01080475
[ODYJ] human metagenome; G_DNA_Stool
171
242
+
Cys
GCA
[ENA]
¢þ
>WENV181149761
OEHT01257168
[OEHT] human metagenome; G_DNA_Stool
162
89
-
Cys
GCA
[ENA]
¢þ
>WENV181199352
OERG01025817
[OERG] metagenome; Caecal content
541
470
-
Cys
GCA
[ENA]
¢þ
>WENV181245945
OFFJ01004711
[OFFJ] mouse gut metagenome; faeces
4879
4950
+
Cys
GCA
[ENA]
¢þ
>WENV181339426
OFMG01000404
[OFMG] human gut metagenome; human gut
15254
15183
-
Cys
GCA
[ENA]
¢þ
>WENV181339427
OFMG01000404
[OFMG] human gut metagenome; human gut
12831
12760
-
Cys
GCA
[ENA]
¢þ
>WENV181344621
OFMK01001645
[OFMK] human gut metagenome; human gut
12743
12672
-
Cys
GCA
[ENA]
¢þ
>WENV181354015
OFMS01000997
[OFMS] human gut metagenome; human gut
14158
14086
-
Cys
GCA
[ENA]
¢þ
>WENV181354294
OFMS01005294
[OFMS] human gut metagenome; human gut
2408
2479
+
Cys
GCA
[ENA]
¢þ
>WENV181695437
OGPC01001431
[OGPC] human gut metagenome; faeces
12381
12310
-
Cys
GCA
[ENA]
¢þ
>WENV181709560
OGPN01001363
[OGPN] human gut metagenome; faeces
2991
3062
+
Cys
GCA
[ENA]
¢þ
>WENV181752300
OGQQ01003119
[OGQQ] human gut metagenome; faeces
7542
7613
+
Cys
GCA
[ENA]
¢þ
>WENV181780465
OGRJ01000885
[OGRJ] human gut metagenome; faeces
1980
2051
+
Cys
GCA
[ENA]
¢þ
>WENV181786161
OGRN01000913
[OGRN] human gut metagenome; faeces
24859
24788
-
Cys
GCA
[ENA]
¢þ
>WENV181829512
OGUN01024207
[OGUN] human gut metagenome; faeces
1630
1559
-
Cys
GCA
[ENA]
¢þ
>WENV181865088
OGWU01007916
[OGWU] human gut metagenome; faeces
2622
2551
-
Cys
GCA
[ENA]
¢þ
>WENV181890980
OGXO01003221
[OGXO] human gut metagenome; faeces
909
838
-
Cys
GCA
[ENA]
¢þ
>WENV181896724
OGXS01002351
[OGXS] human gut metagenome; faeces
3180
3251
+
Cys
GCA
[ENA]
¢þ
>WENV181914615
OGYF01000552
[OGYF] human gut metagenome; faeces
4130
4201
+
Cys
GCA
[ENA]
¢þ
>WENV181914776
OGYF01001139
[OGYF] human gut metagenome; faeces
22986
22914
-
Cys
GCA
[ENA]
¢þ
>WENV181931543
OGYQ01000699
[OGYQ] human gut metagenome; faeces
234
163
-
Cys
GCA
[ENA]
¢þ
>WENV181933436
OGYS01003597
[OGYS] human gut metagenome; faeces
3710
3640
-
Cys
GCA
[ENA]
¢þ
>WENV181940799
OGYY01000304
[OGYY] human gut metagenome; faeces
15632
15702
+
Cys
GCA
[ENA]
¢þ
>WENV181940989
OGYY01000662
[OGYY] human gut metagenome; faeces
19926
19855
-
Cys
GCA
[ENA]
¢þ
>WENV181941089
OGYY01000971
[OGYY] human gut metagenome; faeces
25248
25318
+
Cys
GCA
[ENA]
¢þ
>WENV181973324
OHAA01027520
[OHAA] human gut metagenome; faeces
789
718
-
Cys
GCA
[ENA]
¢þ
>WENV181986432
OHAM01000182
[OHAM] human gut metagenome; faeces
21575
21646
+
Cys
GCA
[ENA]
¢þ
>WENV181986433
OHAM01000182
[OHAM] human gut metagenome; faeces
24587
24658
+
Cys
GCA
[ENA]
¢þ
>WENV182020009
OHBZ01006181
[OHBZ] human gut metagenome; feces
1626
1555
-
Cys
GCA
[ENA]
¢þ
>WENV182022190
OHCC01022430
[OHCC] human gut metagenome; feces
155
84
-
Cys
GCA
[ENA]
¢þ
>WENV182043698
OHDQ01004341
[OHDQ] human gut metagenome; feces
1877
1806
-
Cys
GCA
[ENA]
¢þ
>WENV182102602
OHHV01003967
[OHHV] human gut metagenome; feces
559
488
-
Cys
GCA
[ENA]
¢þ
>WENV182114786
OHIZ01005333
[OHIZ] human gut metagenome; feces
16
87
+
Cys
GCA
[ENA]
¢þ
>WENV182202557
OHPO01015618
[OHPO] human gut metagenome; feces
7
78
+
Cys
GCA
[ENA]
¢þ
>WENV182212878
OHQG01012778
[OHQG] human gut metagenome; feces
31
102
+
Cys
GCA
[ENA]
¢þ
>WENV182223139
OHQZ01002708
[OHQZ] human gut metagenome; feces
882
811
-
Cys
GCA
[ENA]
¢þ
>WENV182229541
OHRI01026016
[OHRI] human gut metagenome; feces
68
139
+
Cys
GCA
[ENA]
¢þ
>WENV182230818
OHRL01022266
[OHRL] human gut metagenome; feces
623
553
-
Cys
GCA
[ENA]
¢þ
>WENV182538133
OIXH01042695
[OIXH] human gut metagenome; faeces
850
921
+
Cys
GCA
[ENA]
¢þ
>WENV182540063
OIXV01061786
[OIXV] human gut metagenome; faeces
407
336
-
Cys
GCA
[ENA]
¢þ
>WENV182600092
OJJF01009985
[OJJF] metagenome; faeces
941
869
-
Cys
GCA
[ENA]
¢þ
>WENV182628665
OJKQ01023966
[OJKQ] metagenome; faeces
262
333
+
Cys
GCA
[ENA]
¢þ
>WENV182670236
OJNK01025820
[OJNK] human gut metagenome; human gut
310
381
+
Cys
GCA
[ENA]
¢þ
>WENV182772991
OJRY01028347
[OJRY] human gut metagenome; human gut
224
154
-
Cys
GCA
[ENA]
¢þ
>WENV182775333
OJSA01018007
[OJSA] human gut metagenome; human gut
758
688
-
Cys
GCA
[ENA]
¢þ
>WENV182782255
OJSF01000021
[OJSF] human gut metagenome; human gut
131791
131721
-
Cys
GCA
[ENA]
¢þ
>WENV182782256
OJSF01000021
[OJSF] human gut metagenome; human gut
122599
122529
-
Cys
GCA
[ENA]
¢þ
>WENV182783490
OJSG01000177
[OJSG] human gut metagenome; human gut
47642
47572
-
Cys
GCA
[ENA]
¢þ
>WENV182783491
OJSG01000177
[OJSG] human gut metagenome; human gut
38450
38380
-
Cys
GCA
[ENA]
¢þ
>WENV182784655
OJSH01000695
[OJSH] human gut metagenome; human gut
10839
10769
-
Cys
GCA
[ENA]
¢þ
>WENV182785508
OJSI01000039
[OJSI] human gut metagenome; human gut
131791
131721
-
Cys
GCA
[ENA]
¢þ
>WENV182785509
OJSI01000039
[OJSI] human gut metagenome; human gut
122599
122529
-
Cys
GCA
[ENA]
¢þ
>WENV182786549
OJSJ01000050
[OJSJ] human gut metagenome; human gut
118972
118902
-
Cys
GCA
[ENA]
¢þ
>WENV182786914
OJSJ01000871
[OJSJ] human gut metagenome; human gut
2535
2465
-
Cys
GCA
[ENA]
¢þ
>WENV182787720
OJSK01000904
[OJSK] human gut metagenome; human gut
2535
2465
-
Cys
GCA
[ENA]
¢þ
>WENV182787931
OJSK01003110
[OJSK] human gut metagenome; human gut
6713
6783
+
Cys
GCA
[ENA]
¢þ
>WENV182789451
OJSL01024219
[OJSL] human gut metagenome; human gut
1007
937
-
Cys
GCA
[ENA]
¢þ
>WENV182866327
OKRR01000041
[OKRR] human gut metagenome; faeces
17177
17106
-
Cys
GCA
[ENA]
¢þ
>WENV182866328
OKRR01000041
[OKRR] human gut metagenome; faeces
14165
14094
-
Cys
GCA
[ENA]
¢þ
>WENV182869781
OKRT01022511
[OKRT] human gut metagenome; faeces
46
116
+
Cys
GCA
[ENA]
¢þ
>WENV182893716
OKSK01008712
[OKSK] human gut metagenome; feces
67
137
+
Cys
GCA
[ENA]
¢þ
>WENV182897772
OKSP01004997
[OKSP] human gut metagenome; feces
1282
1353
+
Cys
GCA
[ENA]
¢þ
>WENV182920727
OKUA01004168
[OKUA] human gut metagenome; feces
647
577
-
Cys
GCA
[ENA]
¢þ
>WENV182965711
OKWT01000066
[OKWT] human gut metagenome; stool
6911
6983
+
Cys
GCA
[ENA]
¢þ
>WENV182965825
OKWT01000345
[OKWT] human gut metagenome; stool
280
350
+
Cys
GCA
[ENA]
¢þ
>WENV183079602
OLIX01044553
[OLIX] human gut metagenome; feces
1008
935
-
Cys
GCA
[ENA]
¢þ
>WENV183094340
OLNC01002399
[OLNC] human gut metagenome; faeces
6349
6278
-
Cys
GCA
[ENA]
¢þ
>WENV183102456
OLNI01000627
[OLNI] human gut metagenome; faeces
25679
25608
-
Cys
GCA
[ENA]
¢þ
>WENV183103476
OLNJ01000632
[OLNJ] human gut metagenome; faeces
2993
3064
+
Cys
GCA
[ENA]
¢þ
>WENV183105922
OLNL01000897
[OLNL] human gut metagenome; faeces
30111
30040
-
Cys
GCA
[ENA]
¢þ
>WENV183120389
OLNU01001464
[OLNU] human gut metagenome; faeces
1072
1001
-
Cys
GCA
[ENA]
¢þ
>WENV183120390
OLNU01001469
[OLNU] human gut metagenome; faeces
15339
15268
-
Cys
GCA
[ENA]
¢þ
>WENV183153118
OLOQ01042854
[OLOQ] human gut metagenome; faeces
229
159
-
Cys
GCA
[ENA]
¢þ
>WENV183173475
OLPD01007077
[OLPD] human gut metagenome; faeces
261
331
+
Cys
GCA
[ENA]
¢þ
>WENV183252645
OLRI01003878
[OLRI] human gut metagenome; faeces
635
706
+
Cys
GCA
[ENA]
¢þ
>WENV183350799
OLWX01015746
[OLWX] human gut metagenome; feces
732
803
+
Cys
GCA
[ENA]
¢þ
>WENV183372015
OLXW01000393
[OLXW] human gut metagenome; feces
30186
30115
-
Cys
GCA
[ENA]
¢þ
>WENV183419545
OMAZ01006660
[OMAZ] human gut metagenome; feces
1370
1441
+
Cys
GCA
[ENA]
¢þ
>WENV183446924
OMCS01000309
[OMCS] human gut metagenome; feces
312
383
+
Cys
GCA
[ENA]
¢þ
>WENV183484364
OMFO01025243
[OMFO] human gut metagenome; feces
724
653
-
Cys
GCA
[ENA]
¢þ
>WENV183488908
OMFZ01007684
[OMFZ] human gut metagenome; feces
821
892
+
Cys
GCA
[ENA]
¢þ
>WENV183502730
OMGT01023565
[OMGT] human gut metagenome; human gut
385
314
-
Cys
GCA
[ENA]
¢þ
>WENV183583358
OOCP01021993
[OOCP] human gut metagenome; human gut
891
962
+
Cys
GCA
[ENA]
¢þ
>WENV183644526
OQVP01022680
[OQVP] human gut metagenome; human gut
1193
1122
-
Cys
GCA
[ENA]
¢þ
>WENV183651094
OQVT01072556
[OQVT] human gut metagenome; human gut
399
326
-
Cys
GCA
[ENA]
¢þ
>WENV183747315
PPCM01000883
[PPCM] marine sediment metagenome; marine sediment
13858
13788
-
Cys
GCA
[ENA]
¢þ
>WENV183750843
PPYE01000534
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
16521
16592
+
Cys
GCA
[ENA]
¢þ
>WENV183750844
PPYE01000534
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
19532
19603
+
Cys
GCA
[ENA]
¢þ
>WENV183753622
PPYE01070094
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1055
984
-
Cys
GCA
[ENA]
¢þ
>WENV183763146
PPYE01293359
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
82
153
+
Cys
GCA
[ENA]
¢þ
>WENV183763776
PPYE01311024
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1047
1117
+
Cys
GCA
[ENA]
¢þ
>WENV183773800
PPYF01027685
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2218
2289
+
Cys
GCA
[ENA]
¢þ
>WENV183774313
PPYF01032565
[PPYF] human gut metagenome; stool from patient with Crohn's disease
791
720
-
Cys
GCA
[ENA]
¢þ
>WENV183776263
PPYF01091674
[PPYF] human gut metagenome; stool from patient with Crohn's disease
995
1066
+
Cys
GCA
[ENA]
¢þ
>WENV183777525
PPYF01103836
[PPYF] human gut metagenome; stool from patient with Crohn's disease
8100
8171
+
Cys
GCA
[ENA]
¢þ
>WENV183777701
PPYF01108163
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1777
1848
+
Cys
GCA
[ENA]
¢þ
>WENV183777713
PPYF01108566
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1736
1665
-
Cys
GCA
[ENA]
¢þ
>WENV183781977
PPYF01208566
[PPYF] human gut metagenome; stool from patient with Crohn's disease
29728
29657
-
Cys
GCA
[ENA]
¢þ
>WENV183781978
PPYF01208566
[PPYF] human gut metagenome; stool from patient with Crohn's disease
27523
27452
-
Cys
GCA
[ENA]
¢þ
>WENV183791785
PPYF01439024
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2325
2396
+
Cys
GCA
[ENA]
¢þ
>WENV183791786
PPYF01439024
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5336
5407
+
Cys
GCA
[ENA]
¢þ
>WENV170014513
AYRG01005558
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
94
164
+
Cys
GCA
[ENA]
¢þ
>C191003052
AP018535
Bacillota
Lachnospiraceae bacterium Choco86 [AP018535]
200620
200691
+
Cys
GCA
-
¡û
>C191128910
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1844310
1844380
+
Cys
GCA
-
¡û
>C191128912
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1844534
1844604
+
Cys
GCA
-
¡û
>C191193269
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
1942900
1942970
+
Cys
GCA
-
¡û
>C191193273
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
1954997
1955067
+
Cys
GCA
-
¡û
>W1910212520
FMIZ01000007
Bacillota
Massilioclostridium coli Marseille-P2976 [FMIZ]
1263740
1263667
-
Cys
GCA
[ENA]
¡û
>W1911502740
OEPZ01000005
Bacillota
Dorea phocaeensis Marseille-P4003 [OEPZ]
6944
7015
+
Cys
GCA
[ENA]
¡û
>W1911502741
OEPZ01000005
Bacillota
Dorea phocaeensis Marseille-P4003 [OEPZ]
7752
7824
+
Cys
GCA
[ENA]
¡û
>W1810044369
BHGK01000001
Bacillota
Mediterraneibacter butyricigenes KCTC 15684 [BHGK]
1288995
1288924
-
Cys
GCA
[ENA]
¡û
>W1810813583
QRZR01000004
Bacillota
Ruminococcus sp. AF14-10 [QRZR]
231208
231279
+
Cys
GCA
[ENA]
¡û
>W1810841543
QSVK01000004
Bacillota
Dorea sp. OM02-2LB [QSVK]
168555
168484
-
Cys
GCA
[ENA]
¡û
>W10118868
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
541
611
+
Cys
GCA
[ENA]
¡û
>W10118870
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
765
835
+
Cys
GCA
[ENA]
¡û
>W11125040
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
541
611
+
Cys
GCA
[ENA]
¡û
>W11125042
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
765
835
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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