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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50797 (59 seq.)
>W1710861548
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
804404
804491
+
Ser
CGA
[ENA]
¡û
>W1710867329
LMIE01000029
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
235966
236053
+
Ser
CGA
[ENA]
¡û
>W1710893469
LNEU01000019
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
32123
32210
+
Ser
CGA
[ENA]
¡û
>W1710893613
LNEY01000008
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
67446
67533
+
Ser
CGA
[ENA]
¡û
>W1711421877
MIAF01000468
Betaproteobacteria
Sideroxydans sp. RIFOXYD2_FULL_59_7 [MIAF]
2221
2134
-
Ser
CGA
[ENA]
¡û
>WENV180020378
FTCZ01002274
[FTCZ] metagenome; soil
12
99
+
Ser
CGA
[ENA]
¡û
>WENV180026032
FTIR01002917
[FTIR] metagenome; soil
1917
1830
-
Ser
CGA
[ENA]
¡û
>WENV180026082
FTIR01030384
[FTIR] metagenome; soil
1
88
+
Ser
CGA
[ENA]
¡û
>WENV180026213
FTIR01392054
[FTIR] metagenome; soil
8468
8381
-
Ser
CGA
[ENA]
¡û
>WENV181221592
OFCW01000024
[OFCW] microbial mat metagenome; Microbial Mat
6278
6191
-
Ser
CGA
[ENA]
¡û
>WENV181231146
OFEK01011055
[OFEK] activated sludge metagenome; Anaerobic digester
1101
1188
+
Ser
CGA
[ENA]
¡û
>W141277668
JAET01000002
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
605922
605835
-
Ser
CGA
[ENA]
¡û
>WENV170011162
APMI01046896
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
501
414
-
Ser
CGA
[ENA]
¡û
>WENV170573161
FLYJ01002043
[FLYJ] hot springs metagenome; Sediment
1775
1688
-
Ser
CGA
[ENA]
¡û
>WENV170600192
FUWD010113275
[FUWD] metagenome; unknown
478
565
+
Ser
CGA
[ENA]
¡û
>WENV170602843
FUWD010269990
[FUWD] metagenome; unknown
684
771
+
Ser
CGA
[ENA]
¡û
>WENV170625854
FUWD013207429
[FUWD] metagenome; unknown
1876
1789
-
Ser
CGA
[ENA]
¡û
>WENV170634073
FUWD013409126
[FUWD] metagenome; unknown
1876
1789
-
Ser
CGA
[ENA]
¡û
>WENV170706685
LNAP01005566
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1338
1425
+
Ser
CGA
[ENA]
¡û
>WENV170707759
LNAP01032847
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
11
98
+
Ser
CGA
[ENA]
¡û
>WENV170707983
LNAP01042824
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1855
1942
+
Ser
CGA
[ENA]
¡û
>WENV170708978
LNFM01000056
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29318
29405
+
Ser
CGA
[ENA]
¡û
>WENV170709595
LNFM01000517
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32618
32705
+
Ser
CGA
[ENA]
¡û
>WENV170709821
LNFM01000771
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20340
20253
-
Ser
CGA
[ENA]
¡û
>WENV170711901
LNFM01008195
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16651
16738
+
Ser
CGA
[ENA]
¡û
>WENV170712000
LNFM01009054
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16099
16183
+
Ser
CGA
[ENA]
¡û
>WENV170712502
LNFM01014135
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
89
+
Ser
CGA
[ENA]
¡û
>WENV170713309
LNFM01028512
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2
89
+
Ser
CGA
[ENA]
¡û
>WENV170714078
LNFM01053089
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2711
2624
-
Ser
CGA
[ENA]
¡û
>C181164196
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1755101
1755014
-
Ser
CGA
-
¡û
>C191163918
CP039252
Betaproteobacteria
Hydrogenophaga sp. PAMC20947 [CP039252]
170916
170829
-
Ser
CGA
-
¡û
>SRA1003807
SRR002327.194467
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
134
221
+
Ser
CGA
[SRA]
>SRA1004060
SRR002328.125317
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
229
142
-
Ser
CGA
[SRA]
>SRA1004151
SRR002328.173394
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
57
144
+
Ser
CGA
[SRA]
>W1810679146
QKOE01000004
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
319034
319121
+
Ser
CGA
[ENA]
¡û
>SRA1014820
SRR023845.326775
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
141
54
-
Ser
CGA
[SRA]
>W2010370419
CAHJWV010000387
Betaproteobacteria
Burkholderiales bacterium [CAHJWV]
8739
8652
-
Ser
CGA
[ENA]
¡û
>W2010521235
JAANMQ010000010
Betaproteobacteria
Azonexus fungiphilus MM2020_3 [JAANMQ]
113401
113488
+
Ser
CGA
[ENA]
¡û
>W2010707230
JACHKR010000004
Betaproteobacteria
Acidovorax konjaci S00067 [JACHKR]
512354
512267
-
Ser
CGA
[ENA]
¡û
>W2012156936
VUYQ01000001
Betaproteobacteria
Dechloromonas sp. CZR5 [VUYQ]
1036702
1036789
+
Ser
CGA
[ENA]
¡û
>W2110363563
JADOVE010000018
Betaproteobacteria
Polaromonas sp. CG_9.11 [JADOVE]
97048
97135
+
Ser
CGA
[ENA]
¡û
>W2110363571
JADOVF010000001
Betaproteobacteria
Polaromonas sp. CG_9.2 [JADOVF]
119528
119615
+
Ser
CGA
[ENA]
¡û
>W2110363612
JADOVG010000001
Betaproteobacteria
Polaromonas sp. CG_9.7 [JADOVG]
119528
119615
+
Ser
CGA
[ENA]
¡û
>W2110445507
JAERQZ010000001
Betaproteobacteria
Piscinibacter sp. HJYY11 [JAERQZ]
1931603
1931516
-
Ser
CGA
[ENA]
¡û
>C201283355
CP054840
Betaproteobacteria
Acidovorax sp. 16-35-5 [CP054840]
820311
820398
+
Ser
CGA
-
¡û
>C211132320
CP060296
Betaproteobacteria
Variovorax sp. PAMC28562 [CP060296]
2281226
2281313
+
Ser
CGA
-
¡û
>C231027624
AP027203
Betaproteobacteria
Polynucleobacter sp. SHI2 [AP027203]
1758237
1758324
+
Ser
CGA
-
¡û
>C231027660
AP027204
Betaproteobacteria
Polynucleobacter sp. SHI8 [AP027204]
1758243
1758330
+
Ser
CGA
-
¡û
>W1511432407
JUGM01000017
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
55095
55008
-
Ser
CGA
[ENA]
¡û
>W1511705371
LGRD01000018
Betaproteobacteria
Methylibium sp. NZG [LGRD]
62594
62681
+
Ser
CGA
[ENA]
¡û
>C161073191
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
913279
913192
-
Ser
CGA
[Ensembl]
¡û
>W1610506450
FLQY01000012
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
30422
30335
-
Ser
CGA
[ENA]
¡û
>W1610723894
LMDS01000001
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
804404
804491
+
Ser
CGA
[ENA]
¡û
>W1610736110
LMNA01000030
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
651464
651377
-
Ser
CGA
[ENA]
¡û
>W1610753735
LNEU01000019
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
32123
32210
+
Ser
CGA
[ENA]
¡û
>W1610753879
LNEY01000008
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
67446
67533
+
Ser
CGA
[ENA]
¡û
>W1710498953
FLQY01000012
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
30422
30335
-
Ser
CGA
[ENA]
¡û
>W1710516938
FNCY01000005
Betaproteobacteria
Propionivibrio dicarboxylicus [FNCY]
129651
129738
+
Ser
CGA
[ENA]
¡û
>W1710539467
FNVJ01000019
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
36739
36652
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK