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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50985 (20 seq.)
>W1711317663
MAXN01000015
Thermodesulfobacteriota
Desulfuromonadales bacterium C00003094 [MAXN]
6355
6268
-
Ser
GGA
[ENA]
¡û
>W1711317667
MAXN01000084
Thermodesulfobacteriota
Desulfuromonadales bacterium C00003094 [MAXN]
89
2
-
Ser
GGA
[ENA]
¡û
>W1711411831
MGTO01000157
Thermodesulfobacteriota
Desulfuromonadales bacterium GWC2_61_20 [MGTO]
2380
2293
-
Ser
GGA
[ENA]
¡û
>W1711411875
MGTQ01000051
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_61_12 [MGTQ]
2285
2198
-
Ser
GGA
[ENA]
¡û
>C171038967
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
343936
344023
+
Ser
GGA
-
¡û
>C171039175
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
1892504
1892417
-
Ser
GGA
-
¡û
>C015910
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
461695
461782
+
Ser
GGA
[Ensembl]
¡û
>WENV180084769
MPMD02237655
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
602
517
-
Ser
GGA
[ENA]
¡û
>WENV180095053
MTBK01045616
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
434
521
+
Ser
GGA
[ENA]
¡û
>W141076088
ATBO01000114
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
500
587
+
Ser
GGA
[ENA]
¡û
>WENV183515582
OMKS01074851
[OMKS] sediment metagenome; hot spring sediment
439
352
-
Ser
GGA
[ENA]
¡û
>WENV170389421
CEUA01013564
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
384
297
-
Ser
GGA
[ENA]
¡û
>WENV170692691
LGOV01022255
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
7055
6968
-
Ser
GGA
[ENA]
¡û
>WENV170695708
LGVE01156996
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
89
2
-
Ser
GGA
[ENA]
¡û
>WENV170698290
LGVF01306501
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
89
2
-
Ser
GGA
[ENA]
¡û
>WENV170814650
MDSW01220668
[MDSW] marine metagenome; seawater
2299
2386
+
Ser
GGA
[ENA]
¡û
>C151066474
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
272466
272553
+
Ser
GGA
[Ensembl]
¡û
>C211018939
AP024355
Thermodesulfobacteriota
Desulfuromonas versatilis NIT-T3 [AP024355]
247012
247099
+
Ser
GGA
-
¡û
>W1710514061
FNAQ01000003
Thermodesulfobacteriota
Desulfuromonas thiophila [FNAQ]
167187
167274
+
Ser
GGA
[ENA]
¡û
>W1710521936
FNGU01000002
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
37176
37089
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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