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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510362 (42 seq.)
>W1710806513
LKBA01000004
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
605242
605317
+
Ala
GGC
[ENA]
¡û
>WENV170013129
ATLU01000044
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
52656
52581
-
Ala
GGC
[ENA]
¡û
>WENV170014370
AYRF01002479
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
420
345
-
Ala
GGC
[ENA]
¡û
>WENV170014553
AYRH01006620
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
299
224
-
Ala
GGC
[ENA]
¡û
>WENV170646332
JQGR01000020
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
25313
25388
+
Ala
GGC
[ENA]
¡û
>WENV170704638
LLEL01017039
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
255
330
+
Ala
GGC
[ENA]
¡û
>WENV170704996
LLEO01000449
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1608
1683
+
Ala
GGC
[ENA]
¡û
>W1911538403
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
2349460
2349385
-
Ala
GGC
[ENA]
¡û
>W2010469926
JAAGOY010000007
Alphaproteobacteria
Aliiroseovarius sp. PrR006 [JAAGOY]
502582
502507
-
Ala
GGC
[ENA]
¡û
>W2011168633
OMOI01000001
Alphaproteobacteria
Aliiroseovarius pelagivivens CECT 8811 [OMOI]
2349460
2349385
-
Ala
GGC
[ENA]
¡û
>W2011524327
SAIT01000001
Alphaproteobacteria
Aliiroseovarius sp. A6024 [SAIT]
46883
46808
-
Ala
GGC
[ENA]
¡û
>W2012037088
VICH01000004
Alphaproteobacteria
Aliiroseovarius halocynthiae MA1-10 [VICH]
102329
102404
+
Ala
GGC
[ENA]
¡û
>W2012234948
WBXQ01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-a-104 [WBXQ]
397542
397617
+
Ala
GGC
[ENA]
¡û
>W2012235004
WBXR01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-a-134 [WBXR]
604742
604817
+
Ala
GGC
[ENA]
¡û
>W2012235052
WBXS01000004
Alphaproteobacteria
Aliiroseovarius sp. xm-a-151 [WBXS]
124107
124032
-
Ala
GGC
[ENA]
¡û
>W2012235112
WBXT01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-d-517 [WBXT]
3108784
3108859
+
Ala
GGC
[ENA]
¡û
>W2012235140
WBXU01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-g-7 [WBXU]
364368
364443
+
Ala
GGC
[ENA]
¡û
>W2012235185
WBXV01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-309 [WBXV]
673977
674052
+
Ala
GGC
[ENA]
¡û
>W2012235237
WBXW01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-314 [WBXW]
328659
328584
-
Ala
GGC
[ENA]
¡û
>W2012235297
WBXX01000004
Alphaproteobacteria
Aliiroseovarius sp. xm-m-339-2 [WBXX]
219108
219183
+
Ala
GGC
[ENA]
¡û
>W2012235333
WBXY01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-354 [WBXY]
673979
674054
+
Ala
GGC
[ENA]
¡û
>W2012235393
WBXZ01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-m-378 [WBXZ]
128212
128137
-
Ala
GGC
[ENA]
¡û
>W2012235426
WBYA01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-m-379 [WBYA]
397542
397617
+
Ala
GGC
[ENA]
¡û
>W2012235474
WBYB01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-201 [WBYB]
673978
674053
+
Ala
GGC
[ENA]
¡û
>W2012235521
WBYC01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-204 [WBYC]
397542
397617
+
Ala
GGC
[ENA]
¡û
>W2012235572
WBYD01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-208 [WBYD]
324175
324100
-
Ala
GGC
[ENA]
¡û
>W2012235621
WBYE01000001
Alphaproteobacteria
Aliiroseovarius sp. xm-v-209 [WBYE]
328659
328584
-
Ala
GGC
[ENA]
¡û
>W2012235681
WBYF01000002
Alphaproteobacteria
Aliiroseovarius sp. xm-v-225 [WBYF]
128212
128137
-
Ala
GGC
[ENA]
¡û
>W2110054329
BNCH01000003
Alphaproteobacteria
Aliiroseovarius zhejiangensis KCTC 42443 [BNCH]
313217
313292
+
Ala
GGC
[ENA]
¡û
>W2110599177
JAHEVJ010000002
Alphaproteobacteria
Planktotalea lamellibrachiae DSM 104669 [JAHEVJ]
427576
427651
+
Ala
GGC
[ENA]
¡û
>C231167742
CP080772
Alphaproteobacteria
Aliiroseovarius crassostreae S044 [CP080772]
591737
591812
+
Ala
GGC
-
¡û
>C231167791
CP080774
Alphaproteobacteria
Aliiroseovarius crassostreae S051 [CP080774]
565507
565582
+
Ala
GGC
-
¡û
>C231167840
CP080776
Alphaproteobacteria
Aliiroseovarius crassostreae S056 [CP080776]
565505
565580
+
Ala
GGC
-
¡û
>C231167889
CP080778
Alphaproteobacteria
Aliiroseovarius crassostreae S128 [CP080778]
570047
570122
+
Ala
GGC
-
¡û
>C231167938
CP080780
Alphaproteobacteria
Aliiroseovarius crassostreae S137 [CP080780]
592584
592659
+
Ala
GGC
-
¡û
>C231168017
CP080782
Alphaproteobacteria
Aliiroseovarius crassostreae S202 [CP080782]
2017755
2017680
-
Ala
GGC
-
¡û
>C231168036
CP080784
Alphaproteobacteria
Aliiroseovarius crassostreae S204 [CP080784]
573383
573458
+
Ala
GGC
-
¡û
>C231168085
CP080786
Alphaproteobacteria
Aliiroseovarius crassostreae S212 [CP080786]
574355
574430
+
Ala
GGC
-
¡û
>C231169849
CP081153
Alphaproteobacteria
Aliiroseovarius sp. M344 [CP081153]
2483396
2483321
-
Ala
GGC
-
¡û
>W1610670287
LKBA01000004
Alphaproteobacteria
Aliiroseovarius crassostreae [LKBA]
605242
605317
+
Ala
GGC
[ENA]
¡û
>W1710555062
FOJB01000001
Alphaproteobacteria
Aliiroseovarius sediminilitoris [FOJB]
912798
912873
+
Ala
GGC
[ENA]
¡û
>W1710578584
FPBS01000001
Alphaproteobacteria
Aliiroseovarius crassostreae [FPBS]
359548
359623
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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