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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52358 (33 seq.)
>A171000193
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
288355
288442
+
Leu
CAA
-
¡û
>A171000493
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1884399
1884315
-
Leu
CAA
-
¡û
>A171002570
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
845954
846041
+
Leu
CAA
-
¡û
>A171002658
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1189959
1190043
+
Leu
CAA
-
¡û
>A171003306
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
492499
492586
+
Leu
CAA
-
¡û
>A171003802
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
93025
92938
-
Leu
CAA
-
¡û
>A171004236
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
486151
486066
-
Leu
CAA
-
¡û
>A171004262
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
10012
10099
+
Leu
CAA
-
¡û
>A171006653
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1238189
1238276
+
Leu
CAA
-
¡û
>A171007121
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
258085
257998
-
Leu
CAA
-
¡û
>At1926
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1201523
1201610
+
Leu
CAA
[Ensembl]
¡û
>W1910229979
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
465966
466053
+
Leu
CAA
[ENA]
¡û
>A241000627
CP015106
Methanobacteriota
Thermococcus radiotolerans EJ2 [CP015106]
931529
931616
+
Leu
CAA
-
¡û
>A241002132
CP040846
Methanobacteriota
Thermococcus indicus IOH1 [CP040846]
575972
576059
+
Leu
CAA
-
¡û
>A241002199
CP041932
Methanobacteriota
Thermococcus aciditolerans SY113 [CP041932]
1103591
1103504
-
Leu
CAA
-
¡û
>W2010383955
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
465966
466053
+
Leu
CAA
[ENA]
¡û
>W2011645606
SNUD01000002
Methanobacteriota
Thermococcus sp. MV11 [SNUD]
60
147
+
Leu
CAA
[ENA]
¡û
>W2011645701
SNUF01000001
Methanobacteriota
Thermococcus sp. MAR1 [SNUF]
382268
382181
-
Leu
CAA
[ENA]
¡û
>W2011645802
SNUH01000002
Methanobacteriota
Thermococcus sp. M36 [SNUH]
443064
442977
-
Leu
CAA
[ENA]
¡û
>W2011645901
SNUK01000001
Methanobacteriota
Thermococcus sp. JdF3 JDF3 [SNUK]
377896
377983
+
Leu
CAA
[ENA]
¡û
>W2011645944
SNUL01000002
Methanobacteriota
Thermococcus sp. GR7 [SNUL]
80313
80400
+
Leu
CAA
[ENA]
¡û
>W2011646005
SNUM01000001
Methanobacteriota
Thermococcus sp. GR6 [SNUM]
807574
807487
-
Leu
CAA
[ENA]
¡û
>W2011646069
SNUN01000009
Methanobacteriota
Thermococcus sp. GR5 [SNUN]
117710
117623
-
Leu
CAA
[ENA]
¡û
>W2011646114
SNUO01000020
Methanobacteriota
Thermococcus sp. GR4 [SNUO]
27480
27567
+
Leu
CAA
[ENA]
¡û
>W2011646126
SNUP01000001
Methanobacteriota
Thermococcus sp. ES12 [SNUP]
120651
120738
+
Leu
CAA
[ENA]
¡û
>W2011646178
SNUQ01000001
Methanobacteriota
Thermococcus sp. CX2 [SNUQ]
634824
634737
-
Leu
CAA
[ENA]
¡û
>W2011646224
SNUR01000002
Methanobacteriota
Thermococcus sp. Bubb.Bath BUBBLE BATH [SNUR]
288821
288906
+
Leu
CAA
[ENA]
¡û
>W2011646333
SNUT01000007
Methanobacteriota
Thermococcus sp. 21S7 [SNUT]
12145
12232
+
Leu
CAA
[ENA]
¡û
>W2011646371
SNUU01000001
Methanobacteriota
Thermococcus sp. 18S1 [SNUU]
1154545
1154458
-
Leu
CAA
[ENA]
¡û
>W2011646402
SNUV01000001
Methanobacteriota
Thermococcus sp. 9N3 [SNUV]
1061822
1061735
-
Leu
CAA
[ENA]
¡û
>W1610000901
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
261533
261446
-
Leu
CAA
[ENA]
¡û
>W1610005302
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
13655
13568
-
Leu
CAA
[ENA]
¡û
>W1610717919
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
70085
69998
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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