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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52806 (46 seq.)
>W1710836220
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1205166
1205077
-
Ser
GCT
[ENA]
¡û
>W1711055466
LRUW01000038
Campylobacterota
Aliarcobacter skirrowii [LRUW]
33443
33532
+
Ser
GCT
[ENA]
¡û
>W1711055496
LRUX01000028
Campylobacterota
Aliarcobacter skirrowii [LRUX]
6726
6815
+
Ser
GCT
[ENA]
¡û
>W1711055531
LRUY01000070
Campylobacterota
Aliarcobacter skirrowii [LRUY]
5393
5304
-
Ser
GCT
[ENA]
¡û
>W1711055563
LRUZ01000034
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
26511
26422
-
Ser
GCT
[ENA]
¡û
>W141274754
JABW01000022
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
46972
46883
-
Ser
GCT
[ENA]
¡û
>W141289884
JARS01000026
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
18952
18863
-
Ser
GCT
[ENA]
¡û
>W141289936
JART01000023
Campylobacterota
Arcobacter sp. AF1028 [JART]
18952
18863
-
Ser
GCT
[ENA]
¡û
>WENV170691280
LFRM01390414
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1972
1883
-
Ser
GCT
[ENA]
¢þ
>WENV170722068
LSQX01215152
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2010
2099
+
Ser
GCT
[ENA]
¢þ
>C181199793
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1396704
1396793
+
Ser
GCT
-
¡û
>C191084566
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
799953
799864
-
Ser
GCT
-
¡û
>C191122843
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
738679
738590
-
Ser
GCT
-
¡û
>C191147087
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1156406
1156495
+
Ser
GCT
-
¡û
>C191149069
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1188858
1188947
+
Ser
GCT
-
¡û
>W1911426157
NXIC01000005
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
21187
21098
-
Ser
GCT
[ENA]
¡û
>W1911576082
PDJS01000035
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
107563
107652
+
Ser
GCT
[ENA]
¡û
>W1911576112
PDJT01000034
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
5253
5164
-
Ser
GCT
[ENA]
¡û
>W1911576548
PDKD01000007
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
1431
1342
-
Ser
GCT
[ENA]
¡û
>W1911576711
PDKH01000002
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
4299
4210
-
Ser
GCT
[ENA]
¡û
>W1911748939
QWFD01000010
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
5282
5193
-
Ser
GCT
[ENA]
¡û
>W1911748982
QWFE01000012
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
5282
5193
-
Ser
GCT
[ENA]
¡û
>W1810584121
QEYG01000055
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
5282
5193
-
Ser
GCT
[ENA]
¡û
>W1810584162
QEYH01000012
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
5282
5193
-
Ser
GCT
[ENA]
¡û
>W1810584204
QEYI01000009
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
5200
5111
-
Ser
GCT
[ENA]
¡û
>W1610584474
LCSK01000008
Campylobacterota
Arcobacter porcinus [LCSK]
71253
71342
+
Ser
GCT
[ENA]
¡û
>W1610584510
LCSL01000006
Campylobacterota
Arcobacter porcinus [LCSL]
80598
80687
+
Ser
GCT
[ENA]
¡û
>W1610584926
LCUH01000009
Campylobacterota
Aliarcobacter thereius [LCUH]
26332
26421
+
Ser
GCT
[ENA]
¡û
>W1610584978
LCUI01000008
Campylobacterota
Arcobacter porcinus [LCUI]
15244
15155
-
Ser
GCT
[ENA]
¡û
>W1610585009
LCUJ01000006
Campylobacterota
Aliarcobacter thereius [LCUJ]
11043
10954
-
Ser
GCT
[ENA]
¡û
>W1610585060
LCUK01000007
Campylobacterota
Aliarcobacter thereius [LCUK]
68717
68806
+
Ser
GCT
[ENA]
¡û
>W1610586375
LDIR01000003
Campylobacterota
Arcobacter porcinus [LDIR]
69015
69104
+
Ser
GCT
[ENA]
¡û
>W1610586423
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
73678
73767
+
Ser
GCT
[ENA]
¡û
>W1610699359
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1205166
1205077
-
Ser
GCT
[ENA]
¡û
>W1610896512
LRUW01000038
Campylobacterota
Aliarcobacter skirrowii [LRUW]
33443
33532
+
Ser
GCT
[ENA]
¡û
>W1610896542
LRUX01000028
Campylobacterota
Aliarcobacter skirrowii [LRUX]
6726
6815
+
Ser
GCT
[ENA]
¡û
>W1610896577
LRUY01000070
Campylobacterota
Aliarcobacter skirrowii [LRUY]
5393
5304
-
Ser
GCT
[ENA]
¡û
>W1610896609
LRUZ01000034
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
26511
26422
-
Ser
GCT
[ENA]
¡û
>W1710703691
LCSK01000008
Campylobacterota
Arcobacter porcinus [LCSK]
71253
71342
+
Ser
GCT
[ENA]
¡û
>W1710703727
LCSL01000006
Campylobacterota
Arcobacter porcinus [LCSL]
80598
80687
+
Ser
GCT
[ENA]
¡û
>W1710704117
LCUH01000009
Campylobacterota
Aliarcobacter thereius [LCUH]
26332
26421
+
Ser
GCT
[ENA]
¡û
>W1710704169
LCUI01000008
Campylobacterota
Arcobacter porcinus [LCUI]
15244
15155
-
Ser
GCT
[ENA]
¡û
>W1710704200
LCUJ01000006
Campylobacterota
Aliarcobacter thereius [LCUJ]
11043
10954
-
Ser
GCT
[ENA]
¡û
>W1710704251
LCUK01000007
Campylobacterota
Aliarcobacter thereius [LCUK]
68717
68806
+
Ser
GCT
[ENA]
¡û
>W1710705505
LDIR01000003
Campylobacterota
Arcobacter porcinus [LDIR]
69015
69104
+
Ser
GCT
[ENA]
¡û
>W1710705553
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
73678
73767
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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