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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538946 (20 seq.)
>WENV180042645
LQAF01016564
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
54
129
+
Ala
TGC
[ENA]
¡û
>WENV180345768
OBLN01004750
[OBLN] sediment metagenome; sediment
132
207
+
Ala
TGC
[ENA]
¡û
>WENV183516368
OMKS01168061
[OMKS] sediment metagenome; hot spring sediment
566
491
-
Ala
TGC
[ENA]
¡û
>WENV183716340
PDWI01302287
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
729
654
-
Ala
TGC
[ENA]
¡û
>WENV183722026
PDWJ01100474
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2220
2145
-
Ala
TGC
[ENA]
¡û
>WENV170642469
JFJP01041415
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2198
2123
-
Ala
TGC
[ENA]
¡û
>WENV170655642
JTFN01053997
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
401
326
-
Ala
TGC
[ENA]
¡û
>WENV170657205
JTFO01102262
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
99
24
-
Ala
TGC
[ENA]
¡û
>WENV170657425
JTFO01148642
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
255
180
-
Ala
TGC
[ENA]
¡û
>WENV170658595
JTFP01158262
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
198
123
-
Ala
TGC
[ENA]
¡û
>WENV170690533
LFRM01346691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3247
3322
+
Ala
TGC
[ENA]
¡û
>W09108811
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
351020
351095
+
Ala
TGC
[ENA]
¡û
>W09108813
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
352499
352574
+
Ala
TGC
[ENA]
¡û
>C231425933
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
3828347
3828422
+
Ala
TGC
-
¡û
>C231425945
CP100351
Thermodesulfobacteriota
Desulfomicrobium sp. ZS1 [CP100351]
2626845
2626770
-
Ala
TGC
-
¡û
>C10104940
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
310459
310534
+
Ala
TGC
[Ensembl]
¡û
>C161069024
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
1524152
1524227
+
Ala
TGC
[Ensembl]
¡û
>C161069060
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
458147
458072
-
Ala
TGC
[Ensembl]
¡û
>W1610082328
BDFE01000005
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
3367
3292
-
Ala
TGC
[ENA]
¡û
>W1710081328
BDFE01000005
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
3367
3292
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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