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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.540395 (52 seq.)
>W1710806116
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
922479
922554
+
Lys
TTT
[ENA]
¡û
>WENV180042908
LQAG01012872
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
111
186
+
Lys
TTT
[ENA]
¡û
>WENV180043629
LQAI01003041
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1820
1895
+
Lys
TTT
[ENA]
¡û
>WENV180044076
LQAJ01001852
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
155
80
-
Lys
TTT
[ENA]
¡û
>WENV170419702
CEUM01136299
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2570
2645
+
Lys
TTT
[ENA]
¡û
>WENV170438813
CEUU01251429
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1463
1538
+
Lys
TTT
[ENA]
¡û
>WENV170441294
CEUV01154691
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
898
973
+
Lys
TTT
[ENA]
¡û
>WENV170470351
CEVF01250594
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
271
196
-
Lys
TTT
[ENA]
¡û
>WENV170896166
MDTD01091182
[MDTD] marine metagenome; seawater
45449
45524
+
Lys
TTT
[ENA]
¡û
>C181227002
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
2080075
2080000
-
Lys
TTT
-
¡û
>W1911738027
QTZO01000010
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
31694
31769
+
Lys
TTT
[ENA]
¡û
>W2010151713
CAADHO010000003
Thermodesulfobacteriota
Desulfoluna butyratoxydans [CAADHO]
717590
717665
+
Lys
TTT
[ENA]
¡û
>W2010151730
CAADHO010000011
Thermodesulfobacteriota
Desulfoluna butyratoxydans [CAADHO]
54972
55047
+
Lys
TTT
[ENA]
¡û
>W2010302623
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
4595284
4595359
+
Lys
TTT
[ENA]
¡û
>W2010302625
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
4595476
4595551
+
Lys
TTT
[ENA]
¡û
>W2010302627
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
4595663
4595738
+
Lys
TTT
[ENA]
¡û
>W2010302639
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
6208724
6208649
-
Lys
TTT
[ENA]
¡û
>W2010302641
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
6208506
6208431
-
Lys
TTT
[ENA]
¡û
>W2010302643
CABVLC010000002
Thermodesulfobacteriota
Desulfoluna spongiiphila [CABVLC]
6208288
6208213
-
Lys
TTT
[ENA]
¡û
>W2011303474
QTZO01000010
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
31694
31769
+
Lys
TTT
[ENA]
¡û
>W2011654901
SOBK01000007
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
167766
167691
-
Lys
TTT
[ENA]
¡û
>W2012226849
WAIE01000003
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
13974
13899
-
Lys
TTT
[ENA]
¡û
>W2012405161
WODC01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. F-1 [WODC]
354840
354915
+
Lys
TTT
[ENA]
¡û
>W2012442014
WUEH01000002
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
146524
146599
+
Lys
TTT
[ENA]
¡û
>W2012510446
WYDS01000017
Thermodesulfobacteriota
Halodesulfovibrio sp. MK-HDV [WYDS]
67361
67436
+
Lys
TTT
[ENA]
¡û
>W2012510447
WYDS01000017
Thermodesulfobacteriota
Halodesulfovibrio sp. MK-HDV [WYDS]
67575
67650
+
Lys
TTT
[ENA]
¡û
>W2012510448
WYDS01000017
Thermodesulfobacteriota
Halodesulfovibrio sp. MK-HDV [WYDS]
67795
67870
+
Lys
TTT
[ENA]
¡û
>W2110515234
JAFMPN010000013
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
73008
72933
-
Lys
TTT
[ENA]
¡û
>C231004599
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
2335361
2335286
-
Lys
TTT
-
¡û
>W10111400
ADDI01000056
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1514
1589
+
Lys
TTT
[ENA]
¡û
>C231343597
CP094380
Thermodesulfobacteriota
Pseudodesulfovibrio tunisiensis RB22 [CP094380]
2776180
2776255
+
Lys
TTT
-
¡û
>C231631032
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
3566420
3566495
+
Lys
TTT
-
¡û
>C241008562
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
2407066
2407141
+
Lys
TTT
-
¡û
>C241108979
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
1289430
1289505
+
Lys
TTT
-
¡û
>C11106856
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
3477127
3477202
+
Lys
TTT
[Ensembl]
¡û
>W11114343
ADDI01000056
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
1514
1589
+
Lys
TTT
[ENA]
¡û
>W11149129
AEUJ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
163101
163176
+
Lys
TTT
[ENA]
¡û
>C121008982
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
2438373
2438448
+
Lys
TTT
[Ensembl]
¡û
>C161068289
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
750078
750003
-
Lys
TTT
[Ensembl]
¡û
>W1610550474
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
35904
35979
+
Lys
TTT
[ENA]
¡û
>W1610550475
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
36116
36191
+
Lys
TTT
[ENA]
¡û
>W1610550476
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
36334
36409
+
Lys
TTT
[ENA]
¡û
>W1710506977
FMUX01000007
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
53813
53738
-
Lys
TTT
[ENA]
¡û
>W1710506979
FMUX01000007
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
53622
53545
-
Lys
TTT
[ENA]
¡û
>W1710506981
FMUX01000007
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
53433
53358
-
Lys
TTT
[ENA]
¡û
>W1710506983
FMUX01000008
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
20
95
+
Lys
TTT
[ENA]
¡û
>W1710594471
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
102361
102286
-
Lys
TTT
[ENA]
¡û
>W1710594472
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
102148
102073
-
Lys
TTT
[ENA]
¡û
>W1710594473
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
101928
101853
-
Lys
TTT
[ENA]
¡û
>W1710660199
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
35904
35979
+
Lys
TTT
[ENA]
¡û
>W1710660200
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
36116
36191
+
Lys
TTT
[ENA]
¡û
>W1710660201
JXMS01000013
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
36334
36409
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK