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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.56506 (41 seq.)
>A171000329
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1111720
1111806
+
Leu
TAG
-
¡û
>A171000338
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1347290
1347203
-
Leu
GAG
-
¡û
>A171000339
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1137732
1137645
-
Leu
CAG
-
¡û
>A171002134
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1561922
1561835
-
Leu
GAG
-
¡û
>A171002135
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1555321
1555235
-
Leu
CAG
-
¡û
>A171002136
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1545194
1545107
-
Leu
TAG
-
¡û
>A171002779
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
290198
290285
+
Leu
CAG
-
¡û
>A171002782
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1116579
1116493
-
Leu
TAG
-
¡û
>A171002784
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1020330
1020244
-
Leu
GAG
-
¡û
>A171002946
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
795880
795967
+
Leu
GAG
-
¡û
>A171002951
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
2428835
2428748
-
Leu
CAG
-
¡û
>A171002959
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
605068
604981
-
Leu
TAG
-
¡û
>A17A001710
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1499962
1499860
-
Leu
CAG
-
¡û
>A17A001712
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1510962
1511063
+
Leu
TAG
-
¡û
>A178000720
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1497453
1497351
-
Asp
GTC
-
¡û
>WENV181408144
OGCH01000701
[OGCH] hot springs metagenome; hot springs
12914
12827
-
Leu
TAG
[ENA]
¢þ
>WENV181408434
OGCH01003176
[OGCH] hot springs metagenome; hot springs
1586
1499
-
Leu
CAG
[ENA]
¢þ
>WENV181408544
OGCH01005084
[OGCH] hot springs metagenome; hot springs
1450
1364
-
Leu
GAG
[ENA]
¢þ
>At0194
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1217578
1217665
+
Leu
CAG
[Ensembl]
¡û
>At0198
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1420272
1420359
+
Leu
GAG
[Ensembl]
¡û
>At0211
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
2020794
2020881
+
Leu
TAG
[Ensembl]
¡û
>At0243
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1351184
1351268
+
Leu
TAG
[Ensembl]
¡û
>At0261
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1155809
1155722
-
Leu
GAG
[Ensembl]
¡û
>At0280
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1877584
1877497
-
Leu
CAG
[Ensembl]
¡û
>At0285
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
326178
326262
+
Leu
CAG
[Ensembl]
¡û
>At0295
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1026727
1026811
+
Leu
GAG
[Ensembl]
¡û
>At0312
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
375732
375648
-
Leu
TAG
[Ensembl]
¡û
>At0334
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
552531
552618
+
Leu
GAG
[Ensembl]
¡û
>At0344
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1678319
1678403
+
Leu
CAG
[Ensembl]
¡û
>At0372
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1699726
1699639
-
Leu
TAG
[Ensembl]
¡û
>WENV170574045
FLYM01000977
[FLYM] hot springs metagenome; Sediment
9153
9239
+
Leu
TAG
[ENA]
¢þ
>WENV170574086
FLYM01004469
[FLYM] hot springs metagenome; Sediment
31011
31097
+
Leu
GAG
[ENA]
¢þ
>W1910595843
JZWT01000034
Thermoproteota
Thermoproteus sp. AZ2 [JZWT]
5616
5531
-
Leu
GAG
[ENA]
¡û
>W1910599129
LCWN02000035
Thermoproteota
Vulcanisaeta sp. EB80 [LCWN]
12786
12699
-
Leu
GAG
[ENA]
¡û
>W1911075116
NMUE01000016
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
39292
39205
-
Leu
TAG
[ENA]
¡û
>W1911075126
NMUE01000056
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
5934
5849
-
Leu
GAG
[ENA]
¡û
>W1911075141
NMUF01000016
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
41927
41840
-
Leu
TAG
[ENA]
¡û
>W1911075146
NMUF01000022
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
10064
10149
+
Leu
GAG
[ENA]
¡û
>W1911075149
NMUF01000043
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
6297
6384
+
Leu
CAG
[ENA]
¡û
>W1610000629
ABIO01000002
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
205854
205767
-
Leu
GAG
[ENA]
¡û
>W1610000631
ABIO01000006
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
97077
97164
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK