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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62196 (25 seq.)
>W131224555
AUCX01000003
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
35369
35455
+
Leu
CAG
[ENA]
¡û
>W131224556
AUCX01000003
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
52247
52333
+
Leu
CAG
[ENA]
¡û
>W131224861
AUDC01000011
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
280307
280393
+
Leu
CAG
[ENA]
¡û
>W131224866
AUDC01000011
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
465823
465909
+
Leu
CAG
[ENA]
¡û
>W1711411618
MGTI01000047
Thermodesulfobacteriota
Desulfobacterales bacterium GWB2_56_26 [MGTI]
10241
10155
-
Leu
CAG
[ENA]
¡û
>WENV180296508
OBJA01000706
[OBJA] soil metagenome; sediment, water from around vicinity
16727
16641
-
Leu
CAG
[ENA]
¢þ
>WENV181207720
OFAZ01021124
[OFAZ] metagenome; hydrothermal vent
96
182
+
Leu
CAG
[ENA]
¢þ
>WENV181908981
OGYB01003395
[OGYB] human gut metagenome; faeces
507
593
+
Leu
CAG
[ENA]
¢þ
>W141201066
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
252790
252876
+
Leu
CAG
[ENA]
¡û
>W141201074
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
1183010
1183096
+
Leu
CAG
[ENA]
¡û
>WENV183512313
OMKS01000253
[OMKS] sediment metagenome; hot spring sediment
27326
27412
+
Leu
CAG
[ENA]
¢þ
>WENV183747157
PPCM01000327
[PPCM] marine sediment metagenome; marine sediment
33923
34009
+
Leu
CAG
[ENA]
¢þ
>WENV183747217
PPCM01000437
[PPCM] marine sediment metagenome; marine sediment
29163
29249
+
Leu
CAG
[ENA]
¢þ
>WENV183747560
PPCM01005216
[PPCM] marine sediment metagenome; marine sediment
1502
1588
+
Leu
CAG
[ENA]
¢þ
>WENV183747600
PPCM01007462
[PPCM] marine sediment metagenome; marine sediment
1169
1083
-
Leu
CAG
[ENA]
¢þ
>WENV170645375
JMSV01001102
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
1210
1296
+
Leu
CAG
[ENA]
¢þ
>WENV170645456
JMSV01005995
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
132
46
-
Leu
CAG
[ENA]
¢þ
>C09104268
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
927185
927099
-
Leu
CAG
[Ensembl]
¡û
>C09104269
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
926943
926857
-
Leu
CAG
[Ensembl]
¡û
>C09104270
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
913752
913666
-
Leu
CAG
[Ensembl]
¡û
>W1810445573
PZKN01000026
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
59281
59367
+
Leu
CAG
[ENA]
¡û
>W1511534113
JYNP01000040
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
18840
18926
+
Leu
CAG
[ENA]
¡û
>C131018074
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
360584
360670
+
Leu
CAG
[Ensembl]
¡û
>C131018075
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
372682
372768
+
Leu
CAG
[Ensembl]
¡û
>W1710520958
FNGA01000002
Thermodesulfobacteriota
Maridesulfovibrio ferrireducens [FNGA]
895764
895850
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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