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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654964 (114 seq.)
>W1710858262
LMBE01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
41254
41328
+
Thr
GGT
[ENA]
¡û
>W1710858289
LMBF01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
3203
3129
-
Thr
GGT
[ENA]
¡û
>W1710858332
LMBG01000022
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
17123
17049
-
Thr
GGT
[ENA]
¡û
>W1710858375
LMBH01000035
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
191
117
-
Thr
GGT
[ENA]
¡û
>W1710858407
LMBI01000006
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
18267
18193
-
Thr
GGT
[ENA]
¡û
>W1711023590
LRAL01000005
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
17701
17627
-
Thr
GGT
[ENA]
¡û
>W1711023607
LRAM01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
199315
199389
+
Thr
GGT
[ENA]
¡û
>W1711029011
LRER01000004
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
120459
120533
+
Thr
GGT
[ENA]
¡û
>W1711029058
LRES01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
199318
199392
+
Thr
GGT
[ENA]
¡û
>W1711029083
LRET01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
17702
17628
-
Thr
GGT
[ENA]
¡û
>W1711029119
LREX01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
199315
199389
+
Thr
GGT
[ENA]
¡û
>W1711029168
LREY01000004
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
195512
195586
+
Thr
GGT
[ENA]
¡û
>W1711029189
LREZ01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
299531
299605
+
Thr
GGT
[ENA]
¡û
>W1711029236
LRFA01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
17839
17765
-
Thr
GGT
[ENA]
¡û
>W1711056037
LRVK01000018
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
19045
19119
+
Thr
GGT
[ENA]
¡û
>W1711056072
LRVL01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
195523
195597
+
Thr
GGT
[ENA]
¡û
>W1711486008
MKEI01000069
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
18122
18048
-
Thr
GGT
[ENA]
¡û
>C171032323
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
1366274
1366200
-
Thr
GGT
-
¡û
>W131001378
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
266973
267047
+
Thr
GGT
[ENA]
¡û
>W131171373
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
166205
166131
-
Thr
GGT
[ENA]
¡û
>W131196557
ASTK01000062
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
17732
17658
-
Thr
GGT
[ENA]
¡û
>C005650
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
1315411
1315337
-
Thr
GGT
[Ensembl]
¡û
>W141021525
AJMC01000041
Campylobacterota
Campylobacter fetus subsp. venerealis B6 [AJMC]
17752
17678
-
Thr
GGT
[ENA]
¡û
>W141022217
AJSG01000049
Campylobacterota
Campylobacter fetus subsp. venerealis 642-21 [AJSG]
17752
17678
-
Thr
GGT
[ENA]
¡û
>WENV181804449
OGSF01000880
[OGSF] human gut metagenome; fecal sample 3 from infant 5
2328
2402
+
Thr
GGT
[ENA]
¢þ
>WENV181806406
OGSK01004020
[OGSK] human gut metagenome; fecal sample 2 from infant 5
906
980
+
Thr
GGT
[ENA]
¢þ
>WENV181811224
OGSY01000288
[OGSY] human gut metagenome; fecal sample 5 from infant 8
23203
23129
-
Thr
GGT
[ENA]
¢þ
>WENV181821344
OGUE01000731
[OGUE] human gut metagenome; fecal sample 1 from infant 5
1410
1336
-
Thr
GGT
[ENA]
¢þ
>WENV182645468
OJLY01027301
[OJLY] metagenome; surface
580
506
-
Thr
GGT
[ENA]
¢þ
>WENV183515617
OMKS01077549
[OMKS] sediment metagenome; hot spring sediment
1030
1104
+
Thr
GGT
[ENA]
¢þ
>WENV183613069
OODU01001755
[OODU] human gut metagenome; human gut
20011
19937
-
Thr
GGT
[ENA]
¢þ
>WENV170686166
LFRM01129613
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
16750
16676
-
Thr
GGT
[ENA]
¢þ
>W141451045
JFAP01000004
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
207741
207667
-
Thr
GGT
[ENA]
¡û
>WENV170723380
LSQX01266485
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
40143
40217
+
Thr
GGT
[ENA]
¢þ
>W141463420
JFJK01000009
Campylobacterota
Campylobacter ureolyticus [JFJK]
102814
102740
-
Thr
GGT
[ENA]
¡û
>W09104932
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
1315411
1315337
-
Thr
GGT
[ENA]
¡û
>C181148769
CP027287
Campylobacterota
Campylobacter fetus subsp. testudinum 772 [CP027287]
1400309
1400235
-
Thr
GGT
-
¡û
>C181212948
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
1305540
1305466
-
Thr
GGT
-
¡û
>W09127794
ACLG01000864
Campylobacterota
Campylobacter fetus subsp. venerealis str. Azul-94 [ACLG]
343
417
+
Thr
GGT
[ENA]
¡û
>C141008992
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
1321785
1321711
-
Thr
GGT
-
¡û
>C141011434
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
1374127
1374053
-
Thr
GGT
[Ensembl]
¡û
>W1910574008
JPPC01000001
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
299596
299670
+
Thr
GGT
[ENA]
¡û
>W1910574049
JPQC01000003
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
17702
17628
-
Thr
GGT
[ENA]
¡û
>W1910640553
LSZN01000046
Campylobacterota
Campylobacter fetus subsp. fetus cff110800-21-2 [LSZN]
2021
1947
-
Thr
GGT
[ENA]
¡û
>W1910804269
MTDX01000002
Campylobacterota
Campylobacter fetus 12S01208-4 [MTDX]
305243
305317
+
Thr
GGT
[ENA]
¡û
>W1910804307
MTDY01000002
Campylobacterota
Campylobacter fetus 12S01908-5 [MTDY]
303227
303301
+
Thr
GGT
[ENA]
¡û
>W1810187714
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
65089
65015
-
Thr
GGT
[ENA]
¡û
>W1810672821
QJTR01000023
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
20377
20303
-
Thr
GGT
[ENA]
¡û
>W1810672861
QJTS01000018
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
142108
142182
+
Thr
GGT
[ENA]
¡û
>C151037781
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
1345265
1345191
-
Thr
GGT
[Ensembl]
¡û
>C151037823
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
1437245
1437171
-
Thr
GGT
[Ensembl]
¡û
>C151045967
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
1322760
1322686
-
Thr
GGT
[Ensembl]
¡û
>C151092532
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1280400
1280326
-
Thr
GGT
-
¡û
>C151100059
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
1431172
1431098
-
Thr
GGT
[Ensembl]
¡û
>W1511349101
JRKX01000074
Campylobacterota
Campylobacter fetus MMM01 [JRKX]
23481
23555
+
Thr
GGT
[ENA]
¡û
>W11161415
AFGH01000030
Campylobacterota
Campylobacter fetus subsp. venerealis NCTC 10354 [AFGH]
17703
17629
-
Thr
GGT
[ENA]
¡û
>C161030024
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
1367051
1366977
-
Thr
GGT
-
¡û
>W1610419716
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102508
102582
+
Thr
GGT
[ENA]
¡û
>W1610419761
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105524
105450
-
Thr
GGT
[ENA]
¡û
>W1610419789
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
102350
102424
+
Thr
GGT
[ENA]
¡û
>W1610550879
JYCP01000023
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
18258
18184
-
Thr
GGT
[ENA]
¡û
>W1610596901
LELD01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
5026
5100
+
Thr
GGT
[ENA]
¡û
>W1610599368
LFLJ01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
17126
17052
-
Thr
GGT
[ENA]
¡û
>W1610599406
LFLK01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
251468
251542
+
Thr
GGT
[ENA]
¡û
>W1610599443
LFLL01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
102450
102524
+
Thr
GGT
[ENA]
¡û
>W1610599481
LFLM01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
71455
71529
+
Thr
GGT
[ENA]
¡û
>W1610599522
LFLN01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
148529
148603
+
Thr
GGT
[ENA]
¡û
>W1610599561
LFLO01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
17128
17054
-
Thr
GGT
[ENA]
¡û
>W1610599599
LFLP01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
118166
118240
+
Thr
GGT
[ENA]
¡û
>W1610599651
LFLQ01000013
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
17124
17050
-
Thr
GGT
[ENA]
¡û
>W1610599803
LFMJ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
17125
17051
-
Thr
GGT
[ENA]
¡û
>W1610609191
LFXC01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
144055
144129
+
Thr
GGT
[ENA]
¡û
>W1610609228
LFXD01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
17242
17168
-
Thr
GGT
[ENA]
¡û
>W1610609269
LFXE01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
111351
111425
+
Thr
GGT
[ENA]
¡û
>W1610609314
LFXF01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
81963
82037
+
Thr
GGT
[ENA]
¡û
>W1610609349
LFXG01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
17094
17020
-
Thr
GGT
[ENA]
¡û
>W1610720608
LMBE01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
41254
41328
+
Thr
GGT
[ENA]
¡û
>W1610720635
LMBF01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
3203
3129
-
Thr
GGT
[ENA]
¡û
>W1610720678
LMBG01000022
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
17123
17049
-
Thr
GGT
[ENA]
¡û
>W1610720721
LMBH01000035
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
191
117
-
Thr
GGT
[ENA]
¡û
>W1610720753
LMBI01000006
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
18267
18193
-
Thr
GGT
[ENA]
¡û
>W1610871702
LRAL01000005
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
17701
17627
-
Thr
GGT
[ENA]
¡û
>W1610871719
LRAM01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
199315
199389
+
Thr
GGT
[ENA]
¡û
>W1610877167
LRER01000004
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
120459
120533
+
Thr
GGT
[ENA]
¡û
>W1610877214
LRES01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
199318
199392
+
Thr
GGT
[ENA]
¡û
>W1610877239
LRET01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
17702
17628
-
Thr
GGT
[ENA]
¡û
>W1610877283
LREU01000002
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
210022
210096
+
Thr
GGT
[ENA]
¡û
>W1610877317
LREV01000003
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREV]
18165
18091
-
Thr
GGT
[ENA]
¡û
>W1610877349
LREW01000002
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
210023
210097
+
Thr
GGT
[ENA]
¡û
>W1610877387
LREX01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
199315
199389
+
Thr
GGT
[ENA]
¡û
>W1610877436
LREY01000004
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
195512
195586
+
Thr
GGT
[ENA]
¡û
>W1610877457
LREZ01000001
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
299531
299605
+
Thr
GGT
[ENA]
¡û
>W1610877504
LRFA01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
17839
17765
-
Thr
GGT
[ENA]
¡û
>W1610897083
LRVK01000018
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
19045
19119
+
Thr
GGT
[ENA]
¡û
>W1610897118
LRVL01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
195523
195597
+
Thr
GGT
[ENA]
¡û
>W1710419452
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102508
102582
+
Thr
GGT
[ENA]
¡û
>W1710419497
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105524
105450
-
Thr
GGT
[ENA]
¡û
>W1710419525
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
102350
102424
+
Thr
GGT
[ENA]
¡û
>W1710660756
JYCP01000023
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
18258
18184
-
Thr
GGT
[ENA]
¡û
>W1710717906
LELD01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
5026
5100
+
Thr
GGT
[ENA]
¡û
>W1710720773
LFLJ01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
17126
17052
-
Thr
GGT
[ENA]
¡û
>W1710720811
LFLK01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
251468
251542
+
Thr
GGT
[ENA]
¡û
>W1710720848
LFLL01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
102450
102524
+
Thr
GGT
[ENA]
¡û
>W1710720886
LFLM01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
71455
71529
+
Thr
GGT
[ENA]
¡û
>W1710720927
LFLN01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
148529
148603
+
Thr
GGT
[ENA]
¡û
>W1710720966
LFLO01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
17128
17054
-
Thr
GGT
[ENA]
¡û
>W1710721004
LFLP01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
118166
118240
+
Thr
GGT
[ENA]
¡û
>W1710721056
LFLQ01000013
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
17124
17050
-
Thr
GGT
[ENA]
¡û
>W1710721246
LFMJ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
17125
17051
-
Thr
GGT
[ENA]
¡û
>W1710730478
LFXC01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
144055
144129
+
Thr
GGT
[ENA]
¡û
>W1710730515
LFXD01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
17242
17168
-
Thr
GGT
[ENA]
¡û
>W1710730556
LFXE01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
111351
111425
+
Thr
GGT
[ENA]
¡û
>W1710730601
LFXF01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
81963
82037
+
Thr
GGT
[ENA]
¡û
>W1710730636
LFXG01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
17094
17020
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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