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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655036 (90 seq.)
>W1710861489
LMDQ01000016
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
97518
97592
+
Arg
CCT
[ENA]
¡û
>W1710865360
LMGP01000016
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
164289
164363
+
Arg
CCT
[ENA]
¡û
>W1710867461
LMIH01000012
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
324043
323969
-
Arg
CCT
[ENA]
¡û
>W1710867567
LMIJ01000030
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
9905
9979
+
Arg
CCT
[ENA]
¡û
>W1710868453
LMJC01000001
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
767349
767423
+
Arg
CCT
[ENA]
¡û
>W1710868715
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
358184
358110
-
Arg
CCT
[ENA]
¡û
>W1710873418
LMMT01000036
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
415893
415967
+
Arg
CCT
[ENA]
¡û
>W1710873494
LMMV01000005
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
65849
65923
+
Arg
CCT
[ENA]
¡û
>W1710873739
LMNA01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
2631
2705
+
Arg
CCT
[ENA]
¡û
>W1710892940
LNEG01000138
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
30176
30250
+
Arg
CCT
[ENA]
¡û
>W1711073184
LSIH01000552
Betaproteobacteria
Acidovorax delafieldii [LSIH]
21510
21436
-
Arg
CCT
[ENA]
¡û
>W1711073540
LSIQ01000201
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
8292
8366
+
Arg
CCT
[ENA]
¡û
>W1711073661
LSIU01000391
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
54
128
+
Arg
CCT
[ENA]
¡û
>W1711075789
LSKS01000105
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
10568
10642
+
Arg
CCT
[ENA]
¡û
>W1711124978
LUKZ01000001
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
153925
153999
+
Arg
CCT
[ENA]
¡û
>W1711384867
MEDM01000030
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
23057
22983
-
Arg
CCT
[ENA]
¡û
>W1711394763
MERR01000009
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
51889
51963
+
Arg
CCT
[ENA]
¡û
>W1711501337
MKRM01000189
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
13921
13847
-
Arg
CCT
[ENA]
¡û
>C171049705
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
2598964
2598890
-
Arg
CCT
-
¡û
>C171118084
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
812660
812586
-
Arg
CCT
-
¡û
>C171118135
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
803255
803181
-
Arg
CCT
-
¡û
>W131178428
ARLO01000070
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
152053
152127
+
Arg
CCT
[ENA]
¡û
>W131227110
AUEX01000006
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
60000
60074
+
Arg
CCT
[ENA]
¡û
>WENV180248756
OBEQ010138030
[OBEQ] groundwater metagenome; groundwater
306
232
-
Arg
CCT
[ENA]
¢þ
>WENV180284619
OBID01071203
[OBID] metagenome; sludge
305
379
+
Arg
CCT
[ENA]
¢þ
>WENV180355636
OBNI01012724
[OBNI] sediment metagenome; sediment
220
294
+
Arg
CCT
[ENA]
¢þ
>WENV181311565
OFJB01004569
[OFJB] sludge metagenome; sludge
4149
4223
+
Arg
CCT
[ENA]
¢þ
>WENV181364952
OFPG01000408
[OFPG] sediment metagenome; Lake sediment
380
454
+
Arg
CCT
[ENA]
¢þ
>WENV181414282
OGCL01000172
[OGCL] hot springs metagenome; Hot spring water
59430
59356
-
Arg
CCT
[ENA]
¢þ
>WENV181414534
OGCL01000587
[OGCL] hot springs metagenome; Hot spring water
5845
5771
-
Arg
CCT
[ENA]
¢þ
>W141276689
JADZ01000014
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
2083
2009
-
Arg
CCT
[ENA]
¡û
>W141278790
JAFU01000004
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
643982
644056
+
Arg
CCT
[ENA]
¡û
>WENV183743513
PJUJ01003223
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1171
1245
+
Arg
CCT
[ENA]
¢þ
>WENV183744794
PJUL01000246
[PJUL] feces metagenome; Chicken feces enriched on filter paper
36544
36470
-
Arg
CCT
[ENA]
¢þ
>WENV183744831
PJUL01000346
[PJUL] feces metagenome; Chicken feces enriched on filter paper
29276
29202
-
Arg
CCT
[ENA]
¢þ
>WENV170605466
FUWD010490128
[FUWD] metagenome; unknown
229
303
+
Arg
CCT
[ENA]
¢þ
>WENV170707589
LNAP01026284
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
431
505
+
Arg
CCT
[ENA]
¢þ
>WENV170708384
LNAP01076034
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
804
730
-
Arg
CCT
[ENA]
¢þ
>WENV170709587
LNFM01000497
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
49991
49917
-
Arg
CCT
[ENA]
¢þ
>C191099904
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1029285
1029211
-
Arg
CCT
-
¡û
>W09133938
ACQT01000161
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
7877
7803
-
Arg
CCT
[ENA]
¡û
>W1910179178
BJHU01000009
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
170261
170187
-
Arg
CCT
[ENA]
¡û
>W1910699754
MERV01000013
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
50886
50960
+
Arg
CCT
[ENA]
¡û
>W1910699804
MERW01000018
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
538906
538980
+
Arg
CCT
[ENA]
¡û
>W1910699858
MERY01000363
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_63_9 [MERY]
628
702
+
Arg
CCT
[ENA]
¡û
>W1910699968
MESB01000220
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
982
1056
+
Arg
CCT
[ENA]
¡û
>W1910700262
MESJ01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
196031
196105
+
Arg
CCT
[ENA]
¡û
>W1910700372
MESL01000021
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
146182
146256
+
Arg
CCT
[ENA]
¡û
>W1911114337
NOIG01000012
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
179915
179989
+
Arg
CCT
[ENA]
¡û
>W1911768557
QXGR01000012
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
108227
108153
-
Arg
CCT
[ENA]
¡û
>W1911770737
QXJC01000003
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
289922
289996
+
Arg
CCT
[ENA]
¡û
>W1911775418
QXNC01000023
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
58362
58436
+
Arg
CCT
[ENA]
¡û
>W1810071522
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
511402
511328
-
Arg
CCT
[ENA]
¡û
>W1810089255
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
1122973
1122899
-
Arg
CCT
[ENA]
¡û
>W1810173352
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
4442431
4442505
+
Arg
CCT
[ENA]
¡û
>W1810474673
QAIM01000024
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
11954
11880
-
Arg
CCT
[ENA]
¡û
>W1810486289
QAXU01000001
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
249285
249211
-
Arg
CCT
[ENA]
¡û
>W1810513843
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
338183
338109
-
Arg
CCT
[ENA]
¡û
>W1810573505
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
1065838
1065912
+
Arg
CCT
[ENA]
¡û
>W1810677483
QKMS01000032
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
17650
17724
+
Arg
CCT
[ENA]
¡û
>W1810683047
QKVP01000003
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
455318
455392
+
Arg
CCT
[ENA]
¡û
>W1810696147
QLTA01000033
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
3806
3732
-
Arg
CCT
[ENA]
¡û
>W1810697070
QLTU01000006
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
108070
107996
-
Arg
CCT
[ENA]
¡û
>W1810759413
QPJK01000001
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
1353633
1353707
+
Arg
CCT
[ENA]
¡û
>SRA1031252
SRR035087.400712
454 Sequencing (SRP001808)
253
179
-
Arg
CCT
[SRA]
>W1511518950
JXYQ01000068
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
28020
28094
+
Arg
CCT
[ENA]
¡û
>W11156532
AFBG01000015
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
46334
46408
+
Arg
CCT
[ENA]
¡û
>W11156591
AFBH01000017
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
46357
46431
+
Arg
CCT
[ENA]
¡û
>W121019074
AGTS01000036
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
965
891
-
Arg
CCT
[ENA]
¡û
>W121086427
AKJX01000137
Betaproteobacteria
Acidovorax sp. CF316 [AKJX]
41935
42009
+
Arg
CCT
[ENA]
¡û
>C131008672
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
4221708
4221782
+
Arg
CCT
[Ensembl]
¡û
>W1610623715
LHUP01000241
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
10492
10566
+
Arg
CCT
[ENA]
¡û
>W1610723835
LMDQ01000016
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
97518
97592
+
Arg
CCT
[ENA]
¡û
>W1610727706
LMGP01000016
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
164289
164363
+
Arg
CCT
[ENA]
¡û
>W1610729807
LMIH01000012
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
324043
323969
-
Arg
CCT
[ENA]
¡û
>W1610729913
LMIJ01000030
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
9905
9979
+
Arg
CCT
[ENA]
¡û
>W1610730799
LMJC01000001
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
767349
767423
+
Arg
CCT
[ENA]
¡û
>W1610731061
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
358184
358110
-
Arg
CCT
[ENA]
¡û
>W1610735764
LMMT01000036
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
415893
415967
+
Arg
CCT
[ENA]
¡û
>W1610735840
LMMV01000005
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
65849
65923
+
Arg
CCT
[ENA]
¡û
>W1610736085
LMNA01000009
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
2631
2705
+
Arg
CCT
[ENA]
¡û
>W1610753206
LNEG01000138
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
30176
30250
+
Arg
CCT
[ENA]
¡û
>W1610912489
LSIH01000552
Betaproteobacteria
Acidovorax delafieldii [LSIH]
21510
21436
-
Arg
CCT
[ENA]
¡û
>W1610912845
LSIQ01000201
Betaproteobacteria
Comamonadaceae bacterium CCH12-A10 [LSIQ]
8292
8366
+
Arg
CCT
[ENA]
¡û
>W1610912966
LSIU01000391
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
54
128
+
Arg
CCT
[ENA]
¡û
>W1610915094
LSKS01000105
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
10568
10642
+
Arg
CCT
[ENA]
¡û
>W1610935911
LUKZ01000001
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
153925
153999
+
Arg
CCT
[ENA]
¡û
>W1710512056
FMZC01000003
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
329539
329613
+
Arg
CCT
[ENA]
¡û
>W1710559432
FOMQ01000002
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
215481
215407
-
Arg
CCT
[ENA]
¡û
>W1710754805
LHUP01000241
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
10492
10566
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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