This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68241 (114 seq.)
>W1710796679
LJSI01000015
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
172166
172252
+
Leu
CAG
[ENA]
¡û
>W1710796680
LJSI01000015
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
172355
172441
+
Leu
CAG
[ENA]
¡û
>W1711666808
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
2817871
2817785
-
Leu
CAG
[ENA]
¡û
>W1711666859
MRCJ01000005
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
173938
173852
-
Leu
CAG
[ENA]
¡û
>W1711666860
MRCJ01000005
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
173776
173690
-
Leu
CAG
[ENA]
¡û
>W131222070
AUAZ01000007
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
69838
69924
+
Leu
CAG
[ENA]
¡û
>W131222071
AUAZ01000007
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
70015
70101
+
Leu
CAG
[ENA]
¡û
>W131229255
AUGR01000002
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
173159
173245
+
Leu
CAG
[ENA]
¡û
>W131229256
AUGR01000002
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
173330
173416
+
Leu
CAG
[ENA]
¡û
>w015082
AAOW01000002
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
136416
136502
+
Leu
CAG
[ENA]
¡û
>w015081
AAOW01000002
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
136259
136345
+
Leu
CAG
[ENA]
¡û
>WENV180042532
LQAF01002139
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1088
1002
-
Leu
CAG
[ENA]
¡û
>WENV183716742
PDWJ01000161
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
56735
56821
+
Leu
CAG
[ENA]
¡û
>WENV183716743
PDWJ01000161
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
56918
57004
+
Leu
CAG
[ENA]
¡û
>WENV170015604
AZIH01010624
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
311
225
-
Leu
CAG
[ENA]
¡û
>WENV170015855
AZIJ01001831
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
809
723
-
Leu
CAG
[ENA]
¡û
>WENV170015856
AZIJ01001831
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
647
561
-
Leu
CAG
[ENA]
¡û
>WENV170112047
CEGC01003338
[CEGC] microbial mat metagenome; grass silage
2345
2431
+
Leu
CAG
[ENA]
¡û
>WENV170112048
CEGC01003338
[CEGC] microbial mat metagenome; grass silage
2507
2593
+
Leu
CAG
[ENA]
¡û
>WENV170112118
CEGD01000843
[CEGD] microbial mat metagenome; grass silage
1
87
+
Leu
CAG
[ENA]
¡û
>WENV170112420
CEGE01007468
[CEGE] microbial mat metagenome; grass silage
85
171
+
Leu
CAG
[ENA]
¡û
>WENV170112421
CEGE01007468
[CEGE] microbial mat metagenome; grass silage
247
333
+
Leu
CAG
[ENA]
¡û
>WENV170112568
CEGF01003853
[CEGF] microbial mat metagenome; grass silage
2996
2910
-
Leu
CAG
[ENA]
¡û
>WENV170112569
CEGF01003853
[CEGF] microbial mat metagenome; grass silage
2834
2748
-
Leu
CAG
[ENA]
¡û
>WENV170654960
JTFN01000283
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
265
179
-
Leu
CAG
[ENA]
¡û
>WENV170654961
JTFN01000283
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
89
3
-
Leu
CAG
[ENA]
¡û
>WENV170655502
JTFN01039172
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
14
100
+
Leu
CAG
[ENA]
¡û
>WENV170655510
JTFN01039683
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
14
100
+
Leu
CAG
[ENA]
¡û
>WENV170656798
JTFO01044748
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
227
141
-
Leu
CAG
[ENA]
¡û
>WENV170657195
JTFO01099505
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
13
99
+
Leu
CAG
[ENA]
¡û
>WENV170657326
JTFO01126326
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
14
100
+
Leu
CAG
[ENA]
¡û
>WENV170657475
JTFO01163557
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
85
-1
-
Leu
CAG
[ENA]
¡û
>WENV170658078
JTFP01051810
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
28
114
+
Leu
CAG
[ENA]
¡û
>W141712345
JMQN01000048
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
58741
58655
-
Leu
CAG
[ENA]
¡û
>W141712346
JMQN01000048
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
58564
58478
-
Leu
CAG
[ENA]
¡û
>W141713641
JMSZ01000001
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
55458
55372
-
Leu
CAG
[ENA]
¡û
>W141713642
JMSZ01000001
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
55330
55244
-
Leu
CAG
[ENA]
¡û
>SRA1000006
SRR000281.3148
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
>SRA1000014
SRR000281.16241
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
>W1810248948
PQBW01002026
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
168
82
-
Leu
CAG
[ENA]
¡û
>W2010683083
JACEMT010000018
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
253
167
-
Leu
CAG
[ENA]
¡û
>W2010683084
JACEMT010000018
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
95
9
-
Leu
CAG
[ENA]
¡û
>W2010683133
JACEMT010000051
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
95979
96065
+
Leu
CAG
[ENA]
¡û
>W2011522277
SACQ01000002
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
358751
358837
+
Leu
CAG
[ENA]
¡û
>W2011522330
SACQ01000041
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
279
193
-
Leu
CAG
[ENA]
¡û
>W2011522331
SACQ01000041
Gammaproteobacteria
Neptunomonas sp. HPM-16 [SACQ]
127
41
-
Leu
CAG
[ENA]
¡û
>W2011633675
SMFU01000012
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
108794
108708
-
Leu
CAG
[ENA]
¡û
>W2011633676
SMFU01000012
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
108604
108518
-
Leu
CAG
[ENA]
¡û
>W2011639519
SMRS01000011
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
829
915
+
Leu
CAG
[ENA]
¡û
>W2011639520
SMRS01000011
Gammaproteobacteria
Nitrincola sp. MEB193 [SMRS]
969
1055
+
Leu
CAG
[ENA]
¡û
>W2011670867
SPLL01000004
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
157358
157444
+
Leu
CAG
[ENA]
¡û
>W2011670868
SPLL01000004
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
157510
157596
+
Leu
CAG
[ENA]
¡û
>W2011963765
VAWC01000001
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
159453
159539
+
Leu
CAG
[ENA]
¡û
>W2011963766
VAWC01000001
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
159611
159697
+
Leu
CAG
[ENA]
¡û
>W2012230771
WBOL01000009
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
102907
102993
+
Leu
CAG
[ENA]
¡û
>W2012230822
WBOM01000007
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
146918
147004
+
Leu
CAG
[ENA]
¡û
>W2012230823
WBOM01000007
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
147082
147168
+
Leu
CAG
[ENA]
¡û
>W2110026511
BMIJ01000010
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
61980
61894
-
Leu
CAG
[ENA]
¡û
>W2110026512
BMIJ01000010
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
61797
61711
-
Leu
CAG
[ENA]
¡û
>W2110030711
BMLT01000002
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
126163
126249
+
Leu
CAG
[ENA]
¡û
>W2110269394
JACVEW010000029
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
33739
33825
+
Leu
CAG
[ENA]
¡û
>W2110496084
JAFFZO010000030
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
11673
11759
+
Leu
CAG
[ENA]
¡û
>W2110496085
JAFFZO010000030
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
11839
11925
+
Leu
CAG
[ENA]
¡û
>W2110496104
JAFFZP010000001
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
164790
164876
+
Leu
CAG
[ENA]
¡û
>W2110496105
JAFFZP010000001
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
164956
165042
+
Leu
CAG
[ENA]
¡û
>W2110500795
JAFIDL010000002
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
382556
382470
-
Leu
CAG
[ENA]
¡û
>W2110500796
JAFIDL010000002
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
382360
382274
-
Leu
CAG
[ENA]
¡û
>W2110602353
JAHHDZ010000006
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
229769
229855
+
Leu
CAG
[ENA]
¡û
>W2110602354
JAHHDZ010000006
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
229931
230017
+
Leu
CAG
[ENA]
¡û
>W2110639304
JAHQZT010000023
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
1
87
+
Leu
CAG
[ENA]
¡û
>W2110639315
JAHQZT010000075
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
707
793
+
Leu
CAG
[ENA]
¡û
>W2110640700
JAHREP010000018
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
62356
62270
-
Leu
CAG
[ENA]
¡û
>W2110640701
JAHREP010000018
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
62174
62088
-
Leu
CAG
[ENA]
¡û
>W2110683922
JAILYN010000013
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
6320
6234
-
Leu
CAG
[ENA]
¡û
>W2110683923
JAILYN010000013
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
6149
6063
-
Leu
CAG
[ENA]
¡û
>C211000141
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
63521
63607
+
Leu
CAG
-
¡û
>C211000142
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
63692
63778
+
Leu
CAG
-
¡û
>C211032063
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
38046
38132
+
Leu
CAG
-
¡û
>C211032064
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
38209
38295
+
Leu
CAG
-
¡û
>C231011301
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
234258
234172
-
Leu
CAG
-
¡û
>C231011302
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
234062
233976
-
Leu
CAG
-
¡û
>C231011380
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
229070
228984
-
Leu
CAG
-
¡û
>C231011381
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
228874
228788
-
Leu
CAG
-
¡û
>C231011452
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
223659
223573
-
Leu
CAG
-
¡û
>C231011453
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
223463
223377
-
Leu
CAG
-
¡û
>C231011454
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
60556
60642
+
Leu
CAG
-
¡û
>C231011455
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
60723
60809
+
Leu
CAG
-
¡û
>W2110747065
LJYU01000028
Gammaproteobacteria
Neptunomonas qingdaonensis P10-2-4 [LJYU]
1012596
1012510
-
Leu
CAG
[ENA]
¡û
>W2110747066
LJYU01000028
Gammaproteobacteria
Neptunomonas qingdaonensis P10-2-4 [LJYU]
1012423
1012337
-
Leu
CAG
[ENA]
¡û
>C231313067
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
44278
44364
+
Leu
CAG
-
¡û
>C231313068
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
44441
44527
+
Leu
CAG
-
¡û
>C241010928
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1722294
1722380
+
Leu
CAG
-
¡û
>C241010929
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1722447
1722533
+
Leu
CAG
-
¡û
>C241083065
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
72225
72311
+
Leu
CAG
-
¡û
>C241083066
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
72383
72469
+
Leu
CAG
-
¡û
>C241087461
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
33969
34055
+
Leu
CAG
-
¡û
>C241087462
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
34088
34174
+
Leu
CAG
-
¡û
>W1511349193
JRLB01000098
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
46515
46429
-
Leu
CAG
[ENA]
¡û
>W1511349194
JRLB01000098
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
46394
46308
-
Leu
CAG
[ENA]
¡û
>W11170419
AFPL01000043
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
57899
57813
-
Leu
CAG
[ENA]
¡û
>W11170420
AFPL01000043
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
57738
57652
-
Leu
CAG
[ENA]
¡û
>W1610660636
LJSI01000015
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
172166
172252
+
Leu
CAG
[ENA]
¡û
>W1610660637
LJSI01000015
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
172355
172441
+
Leu
CAG
[ENA]
¡û
>W1710533772
FNRJ01000015
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
48660
48574
-
Leu
CAG
[ENA]
¡û
>W1710533773
FNRJ01000015
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
48498
48412
-
Leu
CAG
[ENA]
¡û
>W1710539757
FNVQ01000006
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
114500
114414
-
Leu
CAG
[ENA]
¡û
>W1710539758
FNVQ01000006
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
114277
114191
-
Leu
CAG
[ENA]
¡û
>W1710551399
FOGB01000002
Gammaproteobacteria
Amphritea atlantica [FOGB]
158298
158384
+
Leu
CAG
[ENA]
¡û
>W1710562184
FOOU01000001
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
108609
108695
+
Leu
CAG
[ENA]
¡û
>W1710562185
FOOU01000001
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
108782
108868
+
Leu
CAG
[ENA]
¡û
>W1710596409
FTMN01000011
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
60131
60045
-
Leu
CAG
[ENA]
¡û
>W1710596410
FTMN01000011
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
59970
59884
-
Leu
CAG
[ENA]
¡û
>W1710598692
FTOE01000001
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
172250
172336
+
Leu
CAG
[ENA]
¡û
>W1710598693
FTOE01000001
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
172439
172525
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK