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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.686623 (32 seq.)
>W1710926964
LOEV01000114
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
21174
21248
+
Val
TAC
[ENA]
¡û
>WENV180350243
OBLQ010000023
[OBLQ] soil metagenome; soil
9176
9250
+
Val
TAC
[ENA]
¢þ
>WENV181162952
OEIO01045547
[OEIO] marine metagenome; sea ice
495
569
+
Val
TAC
[ENA]
¢þ
>WENV181169295
OEIV010001184
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
10823
10749
-
Val
TAC
[ENA]
¢þ
>WENV181304800
OFIC01004465
[OFIC] marine metagenome; sea ice
396
322
-
Val
TAC
[ENA]
¢þ
>WENV181315151
OFJN01001576
[OFJN] marine metagenome; sea ice
247
173
-
Val
TAC
[ENA]
¢þ
>W141278400
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
3279493
3279419
-
Val
TAC
[ENA]
¡û
>WENV183623767
OOGA01072511
[OOGA] marine metagenome; sea ice
98
24
-
Val
TAC
[ENA]
¢þ
>WENV183627614
OOGL01018011
[OOGL] marine metagenome; sea ice
279
353
+
Val
TAC
[ENA]
¢þ
>WENV183630771
OOGU01001891
[OOGU] marine metagenome; sea ice
1738
1812
+
Val
TAC
[ENA]
¢þ
>WENV183679213
ORMF010029403
[ORMF] groundwater metagenome; groundwater
1966
2040
+
Val
TAC
[ENA]
¢þ
>WENV183683526
ORMF010585433
[ORMF] groundwater metagenome; groundwater
708
782
+
Val
TAC
[ENA]
¢þ
>WENV170000187
AERA01021665
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
2065
2139
+
Val
TAC
[ENA]
¢þ
>WENV170648345
JRHI01000188
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
17667
17741
+
Val
TAC
[ENA]
¢þ
>WENV170649330
JRYC01001049
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1806
1880
+
Val
TAC
[ENA]
¢þ
>WENV170652254
JRYH01000325
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
106626
106552
-
Val
TAC
[ENA]
¢þ
>WENV170655223
JTFN01012979
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
994
1068
+
Val
TAC
[ENA]
¢þ
>W09135214
ACVL01000009
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
60808
60882
+
Val
TAC
[ENA]
¡û
>W1910232054
FPEJ01000005
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
230327
230253
-
Val
TAC
[ENA]
¡û
>C151104296
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
3035393
3035319
-
Val
TAC
[Ensembl]
¡û
>C151104335
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
2738436
2738510
+
Val
TAC
[Ensembl]
¡û
>W1510072635
CDHO01000002
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
364962
365036
+
Val
TAC
[ENA]
¡û
>C10107555
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
1995015
1994941
-
Val
TAC
[Ensembl]
¡û
>WENV11100183
ADWX01322418
Ant fungus garden metagenome, Atta colombica fungus garden
299
225
-
Val
TAC
[ENA]
¡û
>WENV11100545
AERA01021665
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
2065
2139
+
Val
TAC
[ENA]
¡û
>C11111394
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
2777523
2777449
-
Val
TAC
[Ensembl]
¡û
>W11181110
AGIS01000003
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
104691
104617
-
Val
TAC
[ENA]
¡û
>C131015800
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
1216275
1216349
+
Val
TAC
[Ensembl]
¡û
>W1610784506
LOEV01000114
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
21174
21248
+
Val
TAC
[ENA]
¡û
>WENV077668
AAFX01084042
Soil microbial communities from Minnesota Farm
427
353
-
Val
TAC
[ENA]
>W1710524929
FNJC01000003
Alphaproteobacteria
Filomicrobium insigne [FNJC]
425983
426057
+
Val
TAC
[ENA]
¡û
>W1710579352
FPCH01000002
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
716818
716744
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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