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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7168 (48 seq.)
>W1711351462
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
2923529
2923437
-
Ser
GCT
[ENA]
¡û
>W1711351464
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
2923266
2923174
-
Ser
GCT
[ENA]
¡û
>W1711466390
MJMH01000178
Gammaproteobacteria
Vibrio panuliri [MJMH]
41762
41854
+
Ser
GCT
[ENA]
¡û
>W1711466422
MJMI01000008
Gammaproteobacteria
Vibrio ponticus [MJMI]
338
246
-
Ser
GCT
[ENA]
¡û
>W1711466525
MJMJ01000009
Gammaproteobacteria
Vibrio panuliri [MJMJ]
525
433
-
Ser
GCT
[ENA]
¡û
>W1711466527
MJMJ01000009
Gammaproteobacteria
Vibrio panuliri [MJMJ]
263
171
-
Ser
GCT
[ENA]
¡û
>C171047119
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
3016373
3016281
-
Ser
GCT
-
¡û
>C171047121
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
3016110
3016018
-
Ser
GCT
-
¡û
>C026614
AE016795
Gammaproteobacteria
Vibrio vulnificus CMCP6 [AE016795, AE016796]
1570221
1570313
+
Ser
GCT
[Ensembl]
¡û
>W141157388
AXNL01000800
Gammaproteobacteria
Vibrio parahaemolyticus VIP4-0445 [AXNL]
825
917
+
Ser
GCT
[ENA]
¡û
>W141238715
BBMI01000029
Gammaproteobacteria
Vibrio ponticus [BBMI]
12738
12646
-
Ser
GCT
[ENA]
¡û
>W141238717
BBMI01000029
Gammaproteobacteria
Vibrio ponticus [BBMI]
12476
12384
-
Ser
GCT
[ENA]
¡û
>WENV170704302
LLEJ01002265
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
139
47
-
Ser
GCT
[ENA]
¢þ
>WENV170704488
LLEK01001241
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
205
113
-
Ser
GCT
[ENA]
¢þ
>W09118293
ACCV01000004
Gammaproteobacteria
Vibrio sp. 16 16 [ACCV]
1997
1905
-
Ser
GCT
[ENA]
¡û
>W09118295
ACCV01000004
Gammaproteobacteria
Vibrio sp. 16 16 [ACCV]
1727
1635
-
Ser
GCT
[ENA]
¡û
>W1911743629
QVMU01000023
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
958
866
-
Ser
GCT
[ENA]
¡û
>W1911743631
QVMU01000023
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
698
606
-
Ser
GCT
[ENA]
¡û
>W1810406629
PYMH01000008
Gammaproteobacteria
Photobacterium lutimaris JCM 13586 [PYMH]
1016
924
-
Ser
GCT
[ENA]
¡û
>W1810406632
PYMH01000008
Gammaproteobacteria
Photobacterium lutimaris JCM 13586 [PYMH]
668
576
-
Ser
GCT
[ENA]
¡û
>W1810698236
QLYZ01000013
Gammaproteobacteria
Vibrio rhodolitus G98 [QLYZ]
101363
101455
+
Ser
GCT
[ENA]
¡û
>W1810698238
QLYZ01000013
Gammaproteobacteria
Vibrio rhodolitus G98 [QLYZ]
101626
101718
+
Ser
GCT
[ENA]
¡û
>W10107965
ACZV01000005
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [ACZV]
2125170
2125078
-
Ser
GCT
[ENA]
¡û
>W10107967
ACZV01000005
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [ACZV]
2124915
2124823
-
Ser
GCT
[ENA]
¡û
>W11110352
ACZV01000005
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [ACZV]
2125170
2125078
-
Ser
GCT
[ENA]
¡û
>W11110354
ACZV01000005
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [ACZV]
2124915
2124823
-
Ser
GCT
[ENA]
¡û
>W1511357631
JRWM01000027
Gammaproteobacteria
Vibrio variabilis T01 [JRWM]
476
384
-
Ser
GCT
[ENA]
¡û
>W1511357633
JRWM01000027
Gammaproteobacteria
Vibrio variabilis T01 [JRWM]
206
114
-
Ser
GCT
[ENA]
¡û
>W1511357805
JRWP01000035
Gammaproteobacteria
Vibrio sinaloensis T08 [JRWP]
476
384
-
Ser
GCT
[ENA]
¡û
>W1511357807
JRWP01000035
Gammaproteobacteria
Vibrio sinaloensis T08 [JRWP]
206
114
-
Ser
GCT
[ENA]
¡û
>W1511357962
JRWR01000013
Gammaproteobacteria
Vibrio caribbeanicus T14 [JRWR]
21517
21425
-
Ser
GCT
[ENA]
¡û
>W1511357964
JRWR01000013
Gammaproteobacteria
Vibrio caribbeanicus T14 [JRWR]
21247
21155
-
Ser
GCT
[ENA]
¡û
>W1511402625
JTKH01000001
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
21920
21828
-
Ser
GCT
[ENA]
¡û
>W1511402627
JTKH01000001
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
21661
21569
-
Ser
GCT
[ENA]
¡û
>W1511402807
JTKI01000025
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
964
872
-
Ser
GCT
[ENA]
¡û
>W1511402809
JTKI01000025
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
705
613
-
Ser
GCT
[ENA]
¡û
>W1511483494
JWLV01000049
Gammaproteobacteria
Vibrio sinaloensis AD048 [JWLV]
110802
110894
+
Ser
GCT
[ENA]
¡û
>W1511483496
JWLV01000049
Gammaproteobacteria
Vibrio sinaloensis AD048 [JWLV]
111072
111164
+
Ser
GCT
[ENA]
¡û
>W1511500821
JXBJ01000011
Gammaproteobacteria
Vibrio sinaloensis T47 [JXBJ]
21992
21900
-
Ser
GCT
[ENA]
¡û
>W1511500823
JXBJ01000011
Gammaproteobacteria
Vibrio sinaloensis T47 [JXBJ]
21722
21630
-
Ser
GCT
[ENA]
¡û
>W11175249
AFWE01000072
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
21729
21821
+
Ser
GCT
[ENA]
¡û
>W11175468
AFWH01000031
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [AFWH]
38529
38621
+
Ser
GCT
[ENA]
¡û
>W11175470
AFWH01000031
Gammaproteobacteria
Vibrio orientalis CIP 102891 = ATCC 33934 [AFWH]
38784
38876
+
Ser
GCT
[ENA]
¡û
>C161066067
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
692506
692414
-
Ser
GCT
-
¡û
>C161066070
CP014056
Gammaproteobacteria
Grimontia hollisae FDAARGOS_111 [CP014055, CP014056]
692190
692098
-
Ser
GCT
-
¡û
>C161097091
CP016414
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
206877
206969
+
Ser
GCT
[Ensembl]
¡û
>C161097093
CP016414
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
207140
207232
+
Ser
GCT
[Ensembl]
¡û
>W1710082049
BDGP01000211
Gammaproteobacteria
Thaumasiovibrio occultus [BDGP]
30160
30068
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK