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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7214 (123 seq.)
>W1710854731
LLXS01000053
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
6547
6455
-
Ser
GCT
[ENA]
¡û
>W1710854745
LLXU01000053
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
19352
19444
+
Ser
GCT
[ENA]
¡û
>W1710863172
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
293296
293388
+
Ser
GCT
[ENA]
¡û
>W1710865659
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
298961
299053
+
Ser
GCT
[ENA]
¡û
>W1710865879
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
18828
18736
-
Ser
GCT
[ENA]
¡û
>W1710872109
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
329679
329771
+
Ser
GCT
[ENA]
¡û
>W1711147381
LVJP01003529
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4384
4476
+
Ser
GCT
[ENA]
¡û
>W1711147604
LVJT01000108
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
41135
41043
-
Ser
GCT
[ENA]
¡û
>W1711384939
MEDO01000002
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
49391
49483
+
Ser
GCT
[ENA]
¡û
>W1711386532
MEFO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
238097
238005
-
Ser
GCT
[ENA]
¡û
>W1711386574
MEFO01000016
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
12807
12715
-
Ser
GCT
[ENA]
¡û
>W1711386655
MEFP01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
315551
315459
-
Ser
GCT
[ENA]
¡û
>W1711387262
MEGL01000069
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
16754
16846
+
Ser
GCT
[ENA]
¡û
>W1711387538
MEGS01000056
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
4289
4197
-
Ser
GCT
[ENA]
¡û
>W1711424109
MIDT01000115
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
10721
10629
-
Ser
GCT
[ENA]
¡û
>W131175933
ARJQ01000005
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
85777
85685
-
Ser
GCT
[ENA]
¡û
>W1711506470
MKWK01000015
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
2914
2822
-
Ser
GCT
[ENA]
¡û
>W1711506697
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
370842
370750
-
Ser
GCT
[ENA]
¡û
>W131222283
AUBD01000007
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
17318
17226
-
Ser
GCT
[ENA]
¡û
>W131046170
AMSF01000015
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
249595
249503
-
Ser
GCT
[ENA]
¡û
>W131215579
ATVD01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
324346
324254
-
Ser
GCT
[ENA]
¡û
>WENV180015076
FQKF010308557
[FQKF] soil metagenome; Soil
91
-1
-
Ser
GCT
[ENA]
¢þ
>WENV180017619
FSXK01001340
[FSXK] metagenome; soil
2717
2809
+
Ser
GCT
[ENA]
¢þ
>WENV180111603
OAPN01120367
[OAPN] marine metagenome; 2011
278
370
+
Ser
GCT
[ENA]
¢þ
>W141094212
AVCH01000149
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
10923
10831
-
Ser
GCT
[ENA]
¡û
>W141094269
AVCI01000045
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
324430
324338
-
Ser
GCT
[ENA]
¡û
>WENV181166791
OEIU01002159
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3621
3529
-
Ser
GCT
[ENA]
¢þ
>WENV181173262
OEIV011330827
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV181192308
OEPS010559448
[OEPS] soil metagenome; soil
21
113
+
Ser
GCT
[ENA]
¢þ
>WENV181221676
OFCW01000766
[OFCW] microbial mat metagenome; Microbial Mat
1184
1276
+
Ser
GCT
[ENA]
¢þ
>WENV181401646
OFTX01002104
[OFTX] sludge metagenome; sludge
5926
6018
+
Ser
GCT
[ENA]
¢þ
>WENV181412143
OGCI01087932
[OGCI] hot springs metagenome; Hot spring water
418
326
-
Ser
GCT
[ENA]
¢þ
>WENV181732573
OGQD01060656
[OGQD] human gut metagenome; faeces
497
589
+
Ser
GCT
[ENA]
¢þ
>W141207709
AZNZ01000008
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
135097
135189
+
Ser
GCT
[ENA]
¡û
>W141215601
AZUH01000003
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
104118
104210
+
Ser
GCT
[ENA]
¡û
>W141216557
AZUZ01000001
Gammaproteobacteria
Pseudoxanthomonas suwonensis J47 [AZUZ]
159741
159833
+
Ser
GCT
[ENA]
¡û
>W141216657
AZVB01000001
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
242982
242890
-
Ser
GCT
[ENA]
¡û
>W141277568
JAES01000001
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
111431
111523
+
Ser
GCT
[ENA]
¡û
>WENV183698122
OUNK011150699
[OUNK] metagenome; soil
110
18
-
Ser
GCT
[ENA]
¢þ
>WENV183731655
PJTT01000082
[PJTT] soil metagenome; Soil (2) enriched on wood chips
137924
138016
+
Ser
GCT
[ENA]
¢þ
>WENV183731943
PJTU01000015
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
144328
144420
+
Ser
GCT
[ENA]
¢þ
>WENV183732076
PJTV01000007
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
144328
144420
+
Ser
GCT
[ENA]
¢þ
>WENV183732363
PJTX01000054
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
20552
20460
-
Ser
GCT
[ENA]
¢þ
>WENV183733312
PJTY01000870
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8759
8667
-
Ser
GCT
[ENA]
¢þ
>WENV183734082
PJTZ01000042
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
144328
144420
+
Ser
GCT
[ENA]
¢þ
>WENV183734734
PJUA01000001
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
704256
704348
+
Ser
GCT
[ENA]
¢þ
>WENV183735413
PJUB01000001
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
704209
704301
+
Ser
GCT
[ENA]
¢þ
>WENV183736113
PJUC01000032
[PJUC] soil metagenome; Soil enriched on filter paper
149199
149291
+
Ser
GCT
[ENA]
¢þ
>WENV183738779
PJUE01000188
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
49516
49608
+
Ser
GCT
[ENA]
¢þ
>WENV183740001
PJUF01000131
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
27443
27535
+
Ser
GCT
[ENA]
¢þ
>WENV183741542
PJUG01000053
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
112019
112111
+
Ser
GCT
[ENA]
¢þ
>WENV183741972
PJUH01000021
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
29615
29523
-
Ser
GCT
[ENA]
¢þ
>WENV183742798
PJUI01000209
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
14419
14327
-
Ser
GCT
[ENA]
¢þ
>WENV183743186
PJUJ01000121
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
35322
35414
+
Ser
GCT
[ENA]
¢þ
>WENV183743786
PJUK01000001
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
29615
29523
-
Ser
GCT
[ENA]
¢þ
>WENV183744615
PJUL01000034
[PJUL] feces metagenome; Chicken feces enriched on filter paper
219859
219951
+
Ser
GCT
[ENA]
¢þ
>WENV170013434
AUZX01005315
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
321
413
+
Ser
GCT
[ENA]
¢þ
>WENV170013584
AUZY01002951
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
2323
2415
+
Ser
GCT
[ENA]
¢þ
>WENV170013747
AUZZ01002028
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
99
7
-
Ser
GCT
[ENA]
¢þ
>WENV170680661
LFEF01008280
[LFEF] freshwater metagenome; waterbloom
403
495
+
Ser
GCT
[ENA]
¢þ
>WENV170711084
LNFM01003489
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
381
289
-
Ser
GCT
[ENA]
¢þ
>C181039139
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
2243514
2243422
-
Ser
GCT
-
¡û
>C181160773
CP027860
Gammaproteobacteria
Ahniella affigens D13 [CP027860]
3058155
3058063
-
Ser
GCT
-
¡û
>C191003498
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
1749548
1749456
-
Ser
GCT
-
¡û
>C191138593
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
817797
817889
+
Ser
GCT
-
¡û
>C191145566
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
2641281
2641189
-
Ser
GCT
-
¡û
>W141564931
JIBD01000011
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
134941
135033
+
Ser
GCT
[ENA]
¡û
>W1910826161
MWQO01000059
Gammaproteobacteria
Metallibacterium scheffleri DSM 24874 [MWQO]
36724
36632
-
Ser
GCT
[ENA]
¡û
>W1910896605
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
378207
378115
-
Ser
GCT
[ENA]
¡û
>W1911708878
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
608222
608314
+
Ser
GCT
[ENA]
¡û
>W1810354829
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
29030
28938
-
Ser
GCT
[ENA]
¡û
>W1810452302
PZOY01000022
Gammaproteobacteria
Stenotrophomonas panacihumi GSS15 [PZOY]
19383
19475
+
Ser
GCT
[ENA]
¡û
>W1810485590
QAVX01000014
Gammaproteobacteria
Dyella sp. C11 [QAVX]
27320
27412
+
Ser
GCT
[ENA]
¡û
>W1810514402
QBUW01000017
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
36193
36285
+
Ser
GCT
[ENA]
¡û
>W1810597194
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
119397
119489
+
Ser
GCT
[ENA]
¡û
>W1810628348
QICJ01000005
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
76144
76052
-
Ser
GCT
[ENA]
¡û
>W1810629417
QIRF01000003
Gammaproteobacteria
Dyella sp. C9 [QIRF]
438118
438210
+
Ser
GCT
[ENA]
¡û
>W1810783246
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
678067
677975
-
Ser
GCT
[ENA]
¡û
>W1810785076
QRBE01000001
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
791971
792063
+
Ser
GCT
[ENA]
¡û
>W1810785160
QRBF01000010
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
14084
13992
-
Ser
GCT
[ENA]
¡û
>C151023712
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
907093
907185
+
Ser
GCT
[Ensembl]
¡û
>C151039102
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
4113524
4113432
-
Ser
GCT
[Ensembl]
¡û
>C151077914
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
3197755
3197847
+
Ser
GCT
[Ensembl]
¡û
>W1510018815
BBUM02000050
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
27631
27723
+
Ser
GCT
[ENA]
¡û
>W1511305069
JPLA01000026
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
57237
57145
-
Ser
GCT
[ENA]
¡û
>C11118135
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1157273
1157365
+
Ser
GCT
[Ensembl]
¡û
>W1511686263
LFQR01000002
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
18962
18870
-
Ser
GCT
[ENA]
¡û
>C121011549
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
823056
823148
+
Ser
GCT
[Ensembl]
¡û
>C161047159
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
2613472
2613380
-
Ser
GCT
[Ensembl]
¡û
>C161078257
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
1349148
1349056
-
Ser
GCT
[Ensembl]
¡û
>C161085652
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2632803
2632711
-
Ser
GCT
[Ensembl]
¡û
>W1610042742
BAZI01000003
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
33523
33615
+
Ser
GCT
[ENA]
¡û
>W121110740
ALIP01000113
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
54103
54195
+
Ser
GCT
[ENA]
¡û
>W121017551
AGRV01000012
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
431150
431058
-
Ser
GCT
[ENA]
¡û
>W121071296
AJXU01000058
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
367
275
-
Ser
GCT
[ENA]
¡û
>W121113889
ALOY01000161
Gammaproteobacteria
Dyella japonica A8 [ALOY]
55776
55868
+
Ser
GCT
[ENA]
¡û
>W1610207397
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1061524
1061616
+
Ser
GCT
[ENA]
¡û
>W1610586747
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
32328
32420
+
Ser
GCT
[ENA]
¡û
>W1610587059
LDJL01000011
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
290866
290774
-
Ser
GCT
[ENA]
¡û
>W1610587226
LDJO01000016
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
1248
1340
+
Ser
GCT
[ENA]
¡û
>W1610587297
LDJP01000037
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
50044
50136
+
Ser
GCT
[ENA]
¡û
>W1610717008
LLXS01000053
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
6547
6455
-
Ser
GCT
[ENA]
¡û
>W1610717086
LLXU01000053
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
19352
19444
+
Ser
GCT
[ENA]
¡û
>W1610725518
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
293296
293388
+
Ser
GCT
[ENA]
¡û
>W1610728005
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
298961
299053
+
Ser
GCT
[ENA]
¡û
>W1610728225
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
18828
18736
-
Ser
GCT
[ENA]
¡û
>W1610734455
LMLT01000001
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
329679
329771
+
Ser
GCT
[ENA]
¡û
>W1610958334
LVJP01003529
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4384
4476
+
Ser
GCT
[ENA]
¡û
>W1610958557
LVJT01000108
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
41135
41043
-
Ser
GCT
[ENA]
¡û
>WENV080004
AATO01000476
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
215
309
+
Ser
GCT
[ENA]
>W1710039902
BAZI01000003
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
33523
33615
+
Ser
GCT
[ENA]
¡û
>W1710208031
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1061524
1061616
+
Ser
GCT
[ENA]
¡û
>W1710513564
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
388381
388473
+
Ser
GCT
[ENA]
¡û
>W1710519827
FNFA01000015
Gammaproteobacteria
Dyella jiangningensis [FNFA]
81453
81545
+
Ser
GCT
[ENA]
¡û
>W1710541136
FNYC01000001
Gammaproteobacteria
Frateuria terrea [FNYC]
545662
545570
-
Ser
GCT
[ENA]
¡û
>W1710560318
FONH01000003
Gammaproteobacteria
Dyella marensis [FONH]
396356
396448
+
Ser
GCT
[ENA]
¡û
>W1710573370
FOXL01000002
Gammaproteobacteria
Frateuria terrea [FOXL]
545407
545315
-
Ser
GCT
[ENA]
¡û
>W1710575659
FOZI01000002
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
212083
211991
-
Ser
GCT
[ENA]
¡û
>W1710705877
LDJG01000011
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
32328
32420
+
Ser
GCT
[ENA]
¡û
>W1710706189
LDJL01000011
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
290866
290774
-
Ser
GCT
[ENA]
¡û
>W1710706356
LDJO01000016
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
1248
1340
+
Ser
GCT
[ENA]
¡û
>W1710706427
LDJP01000037
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
50044
50136
+
Ser
GCT
[ENA]
¡û
>W1710707108
LDOS01000002
Gammaproteobacteria
Metallibacterium scheffleri [LDOS]
1730969
1730877
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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