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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.79298 (42 seq.)
>W1711797289
MWRZ01000009
Bacteroidota
Zobellia sp. OII3 galactanivorans [MWRZ]
181625
181711
+
Ser
GCT
[ENA]
¡û
>WENV180112865
OAPP01147294
[OAPP] marine metagenome; Surface water
115
31
-
Ser
GCT
[ENA]
¡û
>WENV180294334
OBIY01081473
[OBIY] beach sand metagenome; beach sand
242
158
-
Ser
GCT
[ENA]
¡û
>WENV180396181
OBPU01056038
[OBPU] marine metagenome; ENVO:00002010
362
278
-
Ser
GCT
[ENA]
¡û
>WENV183707842
PDWI01011000
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4011
4097
+
Ser
GCT
[ENA]
¡û
>WENV183718644
PDWJ01005567
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1871
1785
-
Ser
GCT
[ENA]
¡û
>WENV170022590
BCQK01023804
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
460
374
-
Ser
GCT
[ENA]
¡û
>WENV170221423
CEQA01137025
[CEQA] marine metagenome genome assembly TARA_041_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
589
675
+
Ser
GCT
[ENA]
¡û
>WENV170467774
CEVE01268595
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348
262
-
Ser
GCT
[ENA]
¡û
>WENV170469005
CEVF01078002
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
34404
34490
+
Ser
GCT
[ENA]
¡û
>WENV170663466
JYMV01005846
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
189703
189789
+
Ser
GCT
[ENA]
¡û
>WENV170900336
MDTD01152852
[MDTD] marine metagenome; seawater
362
276
-
Ser
GCT
[ENA]
¡û
>C191144610
CP035544
Bacteroidota
Muriicola soli MMS17-SY002 [CP035544]
938356
938442
+
Ser
GCT
-
¡û
>W1911493067
OBEH01000002
Bacteroidota
Flagellimonas pacifica DSM 25885 [OBEH]
144714
144798
+
Ser
GCT
[ENA]
¡û
>W1911538936
OMPF01000025
Bacteroidota
Aquimarina sp. AU119 [OMPF]
41311
41227
-
Ser
GCT
[ENA]
¡û
>W1810121128
PHUD01000001
Bacteroidota
Muricauda sp. ES.050 [PHUD]
2340573
2340657
+
Ser
GCT
[ENA]
¡û
>C151076145
CP011071
Bacteroidota
Allomuricauda lutaonensis CC-HSB-11 [CP011071]
2594335
2594249
-
Ser
GCT
[Ensembl]
¡û
>W2010433227
JAAABI010000007
Bacteroidota
Muricauda sp. JGD-17 [JAAABI]
125435
125519
+
Ser
GCT
[ENA]
¡û
>W2011154018
OBEH01000002
Bacteroidota
Flagellimonas pacifica DSM 25885 [OBEH]
144714
144798
+
Ser
GCT
[ENA]
¡û
>W2011169166
OMPF01000025
Bacteroidota
Aquimarina sp. AU119 [OMPF]
41311
41227
-
Ser
GCT
[ENA]
¡û
>W2011267457
QKWN01000009
Bacteroidota
Robertkochia sp. CL23 [QKWN]
98993
98909
-
Ser
GCT
[ENA]
¡û
>W2011512799
RZNA01000043
Bacteroidota
Muricauda sp. 40DY170 [RZNA]
42037
42121
+
Ser
GCT
[ENA]
¡û
>W2011650482
SNYI01000002
Bacteroidota
Zeaxanthinibacter enoshimensis DSM 18435 [SNYI]
534114
534198
+
Ser
GCT
[ENA]
¡û
>W2012126494
VRUR01000002
Bacteroidota
Flagellimonas sp. 176CP5-101 [VRUR]
1680251
1680167
-
Ser
GCT
[ENA]
¡û
>W2012329277
WHOT01000002
Bacteroidota
Flagellimonas sp. HSM57 [WHOT]
1628684
1628600
-
Ser
GCT
[ENA]
¡û
>W2012441982
WUEG01000005
Bacteroidota
Muricauda sp. TY007 [WUEG]
76939
76855
-
Ser
GCT
[ENA]
¡û
>W2110022438
BMFH01000001
Bacteroidota
Muriicola marianensis CGMCC 1.12606 [BMFH]
660711
660626
-
Ser
GCT
[ENA]
¡û
>W2110271845
JACVMN010000001
Bacteroidota
Flagellimonas sp. S3867 [JACVMN]
123168
123252
+
Ser
GCT
[ENA]
¡û
>W2110511634
JAFLND010000004
Bacteroidota
Muricauda sp. CAU 1631 [JAFLND]
120521
120605
+
Ser
GCT
[ENA]
¡û
>W2110592947
JAHCMU010000026
Bacteroidota
Flagellimonas sp. 389 [JAHCMU]
37883
37967
+
Ser
GCT
[ENA]
¡û
>W2110612912
JAHKQS010000038
Bacteroidota
Zobellia galactanivorans A2M03 [JAHKQS]
182269
182353
+
Ser
GCT
[ENA]
¡û
>W2110701677
JAIVAA010000002
Bacteroidota
Muricauda ruestringensis AmN21-2 [JAIVAA]
93675
93591
-
Ser
GCT
[ENA]
¡û
>C231268358
CP090003
Bacteroidota
Flagellimonas sp. CMM7 [CP090003]
225409
225325
-
Ser
GCT
-
¡û
>C231316166
CP092415
Bacteroidota
Muricauda aquimarina SCSIO W0262 [CP092415]
2910373
2910457
+
Ser
GCT
-
¡û
>C241199165
CP107030
Bacteroidota
Maribacter halichondriae Hal144 [CP107030]
372422
372338
-
Ser
GCT
-
¡û
>C11115105
CP002999
Bacteroidota
Allomuricauda ruestringensis DSM 13258 [CP002999]
2717166
2717250
+
Ser
GCT
[Ensembl]
¡û
>W1511626999
LDAS01000001
Bacteroidota
Maribacter thermophilus HT7-2 [LDAS]
278339
278425
+
Ser
GCT
[ENA]
¡û
>W1610584576
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
1249210
1249124
-
Ser
GCT
[ENA]
¡û
>W1710585582
FQWL01000006
Bacteroidota
Allomuricauda flava flavum [FQWL]
133335
133419
+
Ser
GCT
[ENA]
¡û
>W1710587768
FQYU01000002
Bacteroidota
Pseudozobellia thermophila [FQYU]
1094243
1094159
-
Ser
GCT
[ENA]
¡û
>W1710598561
FTOB01000006
Bacteroidota
Zobellia uliginosa [FTOB]
21909
21823
-
Ser
GCT
[ENA]
¡û
>W1710703767
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
1249210
1249124
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK