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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8103 (55 seq.)
>W1710867342
LMIE01000031
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
197234
197142
-
Ser
GCT
[ENA]
¡û
>W1711268828
LZDH01000065
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
117753
117661
-
Ser
GCT
[ENA]
¡û
>W1711343231
MCIC01000019
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
154508
154600
+
Ser
GCT
[ENA]
¡û
>W1711394806
MERS01000004
Betaproteobacteria
Burkholderiales bacterium GWE1_65_30 [MERS]
217814
217722
-
Ser
GCT
[ENA]
¡û
>W1711394872
MERT01000028
Betaproteobacteria
Burkholderiales bacterium GWF1_66_17 [MERT]
217811
217719
-
Ser
GCT
[ENA]
¡û
>W1711453655
MIYM01000002
Betaproteobacteria
Hydrogenophaga sp. PML113 [MIYM]
385266
385174
-
Ser
GCT
[ENA]
¡û
>W1711502466
MKSS01000228
Betaproteobacteria
Hydrogenophaga sp. 70-12 [MKSS]
2729
2821
+
Ser
GCT
[ENA]
¡û
>W1712049927
NFUT01000002
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
434757
434849
+
Ser
GCT
[ENA]
¡û
>W1712049970
NFUU01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS1 [NFUU]
2303128
2303036
-
Ser
GCT
[ENA]
¡û
>C171049768
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
1320267
1320359
+
Ser
GCT
-
¡û
>C171119342
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
3159565
3159657
+
Ser
GCT
-
¡û
>W131229572
AUGX01000004
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
403187
403279
+
Ser
GCT
[ENA]
¡û
>WENV181841371
OGVR01014750
[OGVR] freshwater metagenome; freshwater
543
635
+
Ser
GCT
[ENA]
¡û
>W141214298
AZSO01000421
Betaproteobacteria
Hydrogenophaga sp. T4 [AZSO]
452
360
-
Ser
GCT
[ENA]
¡û
>WENV170018565
BBPD01000009
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
36058
35966
-
Ser
GCT
[ENA]
¡û
>WENV170018671
BBPD01000308
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
19614
19706
+
Ser
GCT
[ENA]
¡û
>WENV170018919
BBPD01002084
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1681
1589
-
Ser
GCT
[ENA]
¡û
>WENV170019136
BBPD01004515
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1580
1672
+
Ser
GCT
[ENA]
¡û
>WENV170019917
BBPE01001419
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2023
2115
+
Ser
GCT
[ENA]
¡û
>WENV170606223
FUWD010633391
[FUWD] metagenome; unknown
373
465
+
Ser
GCT
[ENA]
¡û
>WENV170646065
JQGF01027169
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
662
570
-
Ser
GCT
[ENA]
¡û
>WENV170709611
LNFM01000529
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18373
18281
-
Ser
GCT
[ENA]
¡û
>C191154115
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
3360801
3360709
-
Ser
GCT
-
¡û
>WENV023979
AACY020770168
Marine microbial communities from Global Ocean Sampling (GOS)
37
131
+
Ser
GCT
[ENA]
>W1911390920
NWBQ01000044
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
56162
56254
+
Ser
GCT
[ENA]
¡û
>W1911398060
NWMV01000045
Betaproteobacteria
Macromonas sp. BK-30 [NWMV]
2638
2546
-
Ser
GCT
[ENA]
¡û
>W1810912331
QVLS01000002
Betaproteobacteria
Hydrogenophaga borbori LA-38 [QVLS]
182748
182840
+
Ser
GCT
[ENA]
¡û
>C151002113
AP014568
Betaproteobacteria
Serpentinimonas raichei A1 [AP014568]
1336613
1336521
-
Ser
GCT
[Ensembl]
¡û
>C151002156
AP014569
Betaproteobacteria
Serpentinimonas maccroryi B1 [AP014569]
1264139
1264047
-
Ser
GCT
[Ensembl]
¡û
>W2010537267
JAAQQT010000612
Betaproteobacteria
Aquabacterium sp. A08 [JAAQQT]
8809
8717
-
Ser
GCT
[ENA]
¡û
>W2010537296
JAAQQT010000676
Betaproteobacteria
Aquabacterium sp. A08 [JAAQQT]
561
653
+
Ser
GCT
[ENA]
¡û
>W2010833420
MESC01000075
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_67_38 [MESC]
93555
93647
+
Ser
GCT
[ENA]
¡û
>W2011133458
NWBQ01000044
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
56162
56254
+
Ser
GCT
[ENA]
¡û
>W2011134868
NWMV01000045
Betaproteobacteria
Macromonas sp. BK-30 [NWMV]
2638
2546
-
Ser
GCT
[ENA]
¡û
>W2011650609
SNYL01000002
Betaproteobacteria
Tepidicella xavieri DSM 19605 [SNYL]
207113
207021
-
Ser
GCT
[ENA]
¡û
>W2011978070
VCPF01000025
Betaproteobacteria
Hydrogenophaga intermedia DSM 5680 [VCPF]
19892
19984
+
Ser
GCT
[ENA]
¡û
>W2012062906
VJOO01000007
Betaproteobacteria
Tepidimonas fonticaldi AT-A2 [VJOO]
51633
51725
+
Ser
GCT
[ENA]
¡û
>W2110563331
JAGPWB010000004
Betaproteobacteria
Hydrogenophaga aromaticivorans D2P3 [JAGPWB]
82715
82623
-
Ser
GCT
[ENA]
¡û
>C201151227
CP044972
Betaproteobacteria
Hydrogenophaga sp. PBL-H3 [CP044972]
2915032
2914940
-
Ser
GCT
-
¡û
>C201151268
CP044975
Betaproteobacteria
Hydrogenophaga sp. PBL-H3 [CP044975]
2915032
2914940
-
Ser
GCT
-
¡û
>C211272903
CP070223
Betaproteobacteria
Hydrogenophaga sp. YM1 [CP070223]
1879693
1879785
+
Ser
GCT
-
¡û
>C231247910
CP087990
Betaproteobacteria
Comamonadaceae bacterium M7527 [CP087990]
986204
986112
-
Ser
GCT
-
¡û
>C241090464
CP044549
Betaproteobacteria
Hydrogenophaga sp. BPS33 [CP044549]
4053200
4053108
-
Ser
GCT
-
¡û
>C241140205
CP049989
Betaproteobacteria
Hydrogenophaga crocea BA0156 [CP049989]
938929
939021
+
Ser
GCT
-
¡û
>W2310026043
BSPB01000001
Betaproteobacteria
Hydrogenophaga electricum NBRC 109341 [BSPB]
73609
73701
+
Ser
GCT
[ENA]
¡û
>W1511429878
JUEA01000117
Betaproteobacteria
Comamonadaceae bacterium BICA1-1 [JUEA]
14051
13959
-
Ser
GCT
[ENA]
¡û
>W121070136
AJWL01000109
Betaproteobacteria
Hydrogenophaga sp. PBC [AJWL]
40552
40644
+
Ser
GCT
[ENA]
¡û
>W1610070398
BCTF01000023
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
94837
94929
+
Ser
GCT
[ENA]
¡û
>W1610070586
BCTJ01000031
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
6815
6723
-
Ser
GCT
[ENA]
¡û
>W1610074408
BCWQ01000013
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
166447
166539
+
Ser
GCT
[ENA]
¡û
>W1610729688
LMIE01000031
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
197234
197142
-
Ser
GCT
[ENA]
¡û
>W1611029640
LZDH01000065
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
117753
117661
-
Ser
GCT
[ENA]
¡û
>W1710067771
BCTF01000023
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
94837
94929
+
Ser
GCT
[ENA]
¡û
>W1710067959
BCTJ01000031
Betaproteobacteria
Hydrogenophaga palleronii NBRC 102513 [BCTJ]
6815
6723
-
Ser
GCT
[ENA]
¡û
>W1710071526
BCWQ01000013
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
166447
166539
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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