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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8119 (61 seq.)
>W1710787509
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
97068
97160
+
Ser
GCT
[ENA]
¡û
>W131231953
AUIW01000004
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
195324
195416
+
Ser
GCT
[ENA]
¡û
>W131160723
AQWU01000058
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
18260
18168
-
Ser
GCT
[ENA]
¡û
>W131155591
AQOS01000002
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
14011
13919
-
Ser
GCT
[ENA]
¡û
>C025907
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1278451
1278359
-
Ser
GCT
[Ensembl]
¡û
>C025945
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1602572
1602480
-
Ser
GCT
[Ensembl]
¡û
>WENV180014095
FPIC01052619
[FPIC] soil metagenome; Soil
89
-1
-
Ser
GCT
[ENA]
¢þ
>W141080500
ATNI01000025
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
41877
41785
-
Ser
GCT
[ENA]
¡û
>C181003588
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1088342
1088250
-
Ser
GCT
-
¡û
>C191159685
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1697638
1697546
-
Ser
GCT
-
¡û
>C191190014
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1957369
1957461
+
Ser
GCT
-
¡û
>W141818266
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1623667
1623575
-
Ser
GCT
[ENA]
¡û
>W141818282
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
616974
617066
+
Ser
GCT
[ENA]
¡û
>W141820366
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1947175
1947083
-
Ser
GCT
[ENA]
¡û
>W141820765
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1535307
1535215
-
Ser
GCT
[ENA]
¡û
>W1911578831
PELM01000029
Deinococcota
Thermus scotoductus 38_S38 [PELM]
4977
5069
+
Ser
GCT
[ENA]
¡û
>W1911578883
PELN01000060
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911578927
PELO01000036
Deinococcota
Thermus scotoductus 35_S35 [PELO]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911578979
PELP01000124
Deinococcota
Thermus scotoductus 34_S34 [PELP]
2079
2171
+
Ser
GCT
[ENA]
¡û
>W1911579076
PELR01000048
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911579155
PELS01000312
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1168
1076
-
Ser
GCT
[ENA]
¡û
>W1911579169
PELT01000034
Deinococcota
Thermus scotoductus 30_S30 [PELT]
4525
4617
+
Ser
GCT
[ENA]
¡û
>W1911579234
PELU01000207
Deinococcota
Thermus scotoductus 29_S29 [PELU]
179
271
+
Ser
GCT
[ENA]
¡û
>W1911579271
PELV01000096
Deinococcota
Thermus scotoductus 28_S28 [PELV]
2176
2268
+
Ser
GCT
[ENA]
¡û
>W1911579350
PELW01000410
Deinococcota
Thermus scotoductus 27_S27 [PELW]
1168
1076
-
Ser
GCT
[ENA]
¡û
>W1911579374
PELX01000103
Deinococcota
Thermus scotoductus 26_S26 [PELX]
2057
2149
+
Ser
GCT
[ENA]
¡û
>W1911579404
PELY01000017
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911579481
PELZ01000434
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1159
1067
-
Ser
GCT
[ENA]
¡û
>W1911579503
PEMA01000093
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1166
1074
-
Ser
GCT
[ENA]
¡û
>W1911579548
PEMB01000041
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
4891
4983
+
Ser
GCT
[ENA]
¡û
>W1911579629
PEMC01000334
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
8107
8199
+
Ser
GCT
[ENA]
¡û
>W1911579642
PEMD01000024
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
4958
5050
+
Ser
GCT
[ENA]
¡û
>W1911579695
PEME01000086
Deinococcota
Thermus scotoductus 19_S19 [PEME]
2042
2134
+
Ser
GCT
[ENA]
¡û
>W1911579743
PEMF01000017
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
1884
1792
-
Ser
GCT
[ENA]
¡û
>W1911579789
PEMG01000041
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
1161
1069
-
Ser
GCT
[ENA]
¡û
>W1911579830
PEMH01000016
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
1915
1823
-
Ser
GCT
[ENA]
¡û
>W1911579882
PEMI01000050
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
3998
4090
+
Ser
GCT
[ENA]
¡û
>W1911579968
PEMJ01000369
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
7805
7897
+
Ser
GCT
[ENA]
¡û
>W1911579976
PEMK01000048
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
4057
4149
+
Ser
GCT
[ENA]
¡û
>W1911580020
PEML01000041
Deinococcota
Thermus scotoductus 12_S12 [PEML]
1168
1076
-
Ser
GCT
[ENA]
¡û
>W1911580110
PEMM01000295
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
8096
8188
+
Ser
GCT
[ENA]
¡û
>W1911580127
PEMN01000035
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
4891
4983
+
Ser
GCT
[ENA]
¡û
>W1911580171
PEMO01000054
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
3998
4090
+
Ser
GCT
[ENA]
¡û
>W1911580224
PEMP01000113
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
2047
2139
+
Ser
GCT
[ENA]
¡û
>W1911580268
PEMQ01000078
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911580352
PEMR01000297
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
8106
8198
+
Ser
GCT
[ENA]
¡û
>W1911580397
PEMS01000425
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
8145
8237
+
Ser
GCT
[ENA]
¡û
>W1911580411
PEMT01000031
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1195
1103
-
Ser
GCT
[ENA]
¡û
>W1911580465
PEMU01000072
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
1167
1075
-
Ser
GCT
[ENA]
¡û
>W1911580504
PEMV01000023
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1168
1076
-
Ser
GCT
[ENA]
¡û
>W1911580562
PEMW01000139
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
2037
2129
+
Ser
GCT
[ENA]
¡û
>W1810268465
PRDA01000076
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
1986
2078
+
Ser
GCT
[ENA]
¡û
>W1810605090
QGMX01000003
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
240456
240548
+
Ser
GCT
[ENA]
¡û
>W1511312800
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
470566
470474
-
Ser
GCT
[ENA]
¡û
>C11123064
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
2234843
2234751
-
Ser
GCT
[Ensembl]
¡û
>C11123198
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1633185
1633093
-
Ser
GCT
[Ensembl]
¡û
>C121006390
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
341574
341666
+
Ser
GCT
[Ensembl]
¡û
>C121009725
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
306496
306588
+
Ser
GCT
[Ensembl]
¡û
>C161067087
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
397042
397134
+
Ser
GCT
[Ensembl]
¡û
>W1610651364
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
97068
97160
+
Ser
GCT
[ENA]
¡û
>W1710514632
FNBC01000002
Deinococcota
Thermus arciformis [FNBC]
73689
73597
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK