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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83367 (38 seq.)
>W1711078281
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1396
1311
-
Leu
TAA
[ENA]
¡û
>W1711624686
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
20567
20652
+
Leu
TAA
[ENA]
¡û
>W1711624689
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
20975
21060
+
Leu
TAA
[ENA]
¡û
>W1711624690
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
21179
21264
+
Leu
TAA
[ENA]
¡û
>W1711767403
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21613
21528
-
Leu
TAA
[ENA]
¡û
>W1711767406
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21205
21120
-
Leu
TAA
[ENA]
¡û
>W1711767407
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21002
20917
-
Leu
TAA
[ENA]
¡û
>W1711767462
MUZV01000008
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
43759
43844
+
Leu
TAA
[ENA]
¡û
>W1711947517
NBOD01000010
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
40980
41065
+
Leu
TAA
[ENA]
¡û
>C171034579
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
267709
267624
-
Leu
TAA
-
¡û
>C171034582
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
267232
267147
-
Leu
TAA
-
¡û
>C171034583
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
266870
266785
-
Leu
TAA
-
¡û
>WENV180210039
OBAL01074703
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
266
181
-
Leu
TAA
[ENA]
¢þ
>WENV182540235
OJAF01000585
[OJAF] seawater metagenome; Sea water
270
185
-
Leu
TAA
[ENA]
¢þ
>WENV182549953
OJBZ01000765
[OJBZ] seawater metagenome; Sea water
14609
14524
-
Leu
TAA
[ENA]
¢þ
>WENV182560021
OJDR01000296
[OJDR] seawater metagenome; Sea water
3
88
+
Leu
TAA
[ENA]
¢þ
>WENV182560023
OJDR01000296
[OJDR] seawater metagenome; Sea water
264
349
+
Leu
TAA
[ENA]
¢þ
>WENV182562429
OJDZ01002897
[OJDZ] seawater metagenome; Sea water
8
93
+
Leu
TAA
[ENA]
¢þ
>WENV182568589
OJEV01011267
[OJEV] seawater metagenome; Sea water
273
358
+
Leu
TAA
[ENA]
¢þ
>WENV182577694
OJGH01001166
[OJGH] seawater metagenome; Sea water
1622
1537
-
Leu
TAA
[ENA]
¢þ
>WENV183059819
OLHV01008434
[OLHV] seawater metagenome; Sea water
178
93
-
Leu
TAA
[ENA]
¢þ
>WENV170780437
MAAB01001211
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
62330
62245
-
Leu
TAA
[ENA]
¢þ
>WENV170780594
MAAB01007674
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
12857
12772
-
Leu
TAA
[ENA]
¢þ
>WENV170780597
MAAB01007674
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
12225
12140
-
Leu
TAA
[ENA]
¢þ
>WENV170780992
MAAB01028921
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
32622
32537
-
Leu
TAA
[ENA]
¢þ
>WENV170780995
MAAB01028921
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
31939
31854
-
Leu
TAA
[ENA]
¢þ
>WENV170781307
MAAB01032006
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
527
442
-
Leu
TAA
[ENA]
¢þ
>WENV170782469
MAAC01010131
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2216
2131
-
Leu
TAA
[ENA]
¢þ
>WENV170782472
MAAC01010131
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1568
1483
-
Leu
TAA
[ENA]
¢þ
>WENV170782503
MAAC01010171
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
468410
468325
-
Leu
TAA
[ENA]
¢þ
>WENV170782506
MAAC01010171
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
467778
467693
-
Leu
TAA
[ENA]
¢þ
>C191128375
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2803261
2803176
-
Leu
TAA
-
¡û
>C191128378
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2802832
2802747
-
Leu
TAA
-
¡û
>C191128380
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2802575
2802490
-
Leu
TAA
-
¡û
>W1810154288
PIZK01000001
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
41227
41312
+
Leu
TAA
[ENA]
¡û
>W1810154290
PIZK01000001
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
41469
41554
+
Leu
TAA
[ENA]
¡û
>W1810154291
PIZK01000001
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
41647
41732
+
Leu
TAA
[ENA]
¡û
>W1610917297
LSMS01000181
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1396
1311
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK