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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8664 (55 seq.)
>W131160723
AQWU01000058
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
18260
18168
-
Ser
GCT
[ENA]
¡û
>C171047229
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
761766
761674
-
Ser
GCT
-
¡û
>W131155591
AQOS01000002
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
14011
13919
-
Ser
GCT
[ENA]
¡û
>W131167499
ARDI01000002
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
203306
203398
+
Ser
GCT
[ENA]
¡û
>W131218080
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
143283
143191
-
Ser
GCT
[ENA]
¡û
>C025907
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1278451
1278359
-
Ser
GCT
[Ensembl]
¡û
>C025945
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1602572
1602480
-
Ser
GCT
[Ensembl]
¡û
>WENV180013564
FMSI01103635
[FMSI] soil metagenome; Soil
37
129
+
Ser
GCT
[ENA]
¡û
>WENV180014354
FPIC01190640
[FPIC] soil metagenome; Soil
93
1
-
Ser
GCT
[ENA]
¡û
>WENV180015617
FQKF011010971
[FQKF] soil metagenome; Soil
10
102
+
Ser
GCT
[ENA]
¡û
>WENV180037384
FVAA010980438
[FVAA] soil metagenome; Soil
93
1
-
Ser
GCT
[ENA]
¡û
>WENV181404902
OGCB01001409
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
2188
2280
+
Ser
GCT
[ENA]
¡û
>WENV181405534
OGCE01000290
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
19084
18992
-
Ser
GCT
[ENA]
¡û
>WENV181408174
OGCH01000854
[OGCH] hot springs metagenome; hot springs
4792
4884
+
Ser
GCT
[ENA]
¡û
>C181003588
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1088342
1088250
-
Ser
GCT
-
¡û
>C191190014
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1957369
1957461
+
Ser
GCT
-
¡û
>W141818282
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
616974
617066
+
Ser
GCT
[ENA]
¡û
>W1810889176
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1108919
1108827
-
Ser
GCT
[ENA]
¡û
>W2011589525
SIJL01000011
Deinococcota
Thermus sp. CFH 72773T [SIJL]
81239
81331
+
Ser
GCT
[ENA]
¡û
>W2011616009
SJZF01000001
Deinococcota
Thermus tengchongensis 15W [SJZF]
81150
81242
+
Ser
GCT
[ENA]
¡û
>W2011616320
SKBL01000005
Deinococcota
Thermus tengchongensis 15Y [SKBL]
289
381
+
Ser
GCT
[ENA]
¡û
>W2012029943
VHHQ01000018
Deinococcota
Thermus thermophilus IB-21 [VHHQ]
29382
29474
+
Ser
GCT
[ENA]
¡û
>W2110035110
BMPJ01000014
Deinococcota
Thermus composti JCM 19902 [BMPJ]
48698
48790
+
Ser
GCT
[ENA]
¡û
>C211017809
AP024270
Deinococcota
Thermus thermophilus HB5018 [AP024270]
1707870
1707778
-
Ser
GCT
-
¡û
>C211017940
AP024301
Deinococcota
Thermus thermophilus HB5002 [AP024301]
1808058
1807966
-
Ser
GCT
-
¡û
>C211017988
AP024305
Deinococcota
Thermus thermophilus HB5008 [AP024305]
1807004
1806912
-
Ser
GCT
-
¡û
>C211028112
AP024926
Deinococcota
Thermus thermophilus AA1-1 [AP024926]
1706407
1706315
-
Ser
GCT
-
¡û
>C211028159
AP024929
Deinococcota
Thermus thermophilus AA2-2 [AP024929]
1697854
1697762
-
Ser
GCT
-
¡û
>C211028206
AP024933
Deinococcota
Thermus thermophilus AA3-7 [AP024933]
1724151
1724059
-
Ser
GCT
-
¡û
>C211028254
AP024937
Deinococcota
Thermus thermophilus AK1 [AP024937]
1702958
1702866
-
Ser
GCT
-
¡û
>C211028772
AP024984
Deinococcota
Thermus thermophilus JCM10941 [AP024984]
1604244
1604152
-
Ser
GCT
-
¡û
>C211029835
AP025158
Deinococcota
Thermus thermophilus TMY [AP025158]
1905363
1905271
-
Ser
GCT
-
¡û
>C211395024
CP082323
Deinococcota
Thermus thermophilus N-1 [CP082323]
1606560
1606468
-
Ser
GCT
-
¡û
>C231017236
AP025593
Deinococcota
Thermus brockianus SNM4-1 [AP025593]
307288
307380
+
Ser
GCT
-
¡û
>C231017304
AP025596
Deinococcota
Thermus thermophilus SNM1-1 [AP025596]
1887783
1887691
-
Ser
GCT
-
¡û
>C231017352
AP025603
Deinococcota
Thermus thermophilus SNM1-7 [AP025603]
1624727
1624635
-
Ser
GCT
-
¡û
>C231017399
AP025609
Deinococcota
Thermus thermophilus SNM3-3 [AP025609]
1729471
1729379
-
Ser
GCT
-
¡û
>C231017426
AP025613
Deinococcota
Thermus thermophilus SNM6-6 [AP025613]
287974
288066
+
Ser
GCT
-
¡û
>C231017473
AP025617
Deinococcota
Thermus thermophilus SNM7-6 [AP025617]
293862
293954
+
Ser
GCT
-
¡û
>C241002759
AP019801
Deinococcota
Thermus thermophilus HC11 [AP019801]
1670349
1670257
-
Ser
GCT
-
¡û
>C241008358
AP025540
Deinococcota
Thermus thermophilus HB8_001 [AP025540]
1605367
1605275
-
Ser
GCT
-
¡û
>C241307762
CP133179
Deinococcota
Thermus thermophilus HB27 [CP133179]
1279510
1279418
-
Ser
GCT
-
¡û
>W1511401677
JTJB01000001
Deinococcota
Thermus sp. 2.9 [JTJB]
198169
198261
+
Ser
GCT
[ENA]
¡û
>C11123198
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1633185
1633093
-
Ser
GCT
[Ensembl]
¡û
>C121006390
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
341574
341666
+
Ser
GCT
[Ensembl]
¡û
>C121009725
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
306496
306588
+
Ser
GCT
[Ensembl]
¡û
>C161028687
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
2055140
2055048
-
Ser
GCT
-
¡û
>C161067087
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
397042
397134
+
Ser
GCT
[Ensembl]
¡û
>W121056046
AIJQ01000016
Deinococcota
Thermus parvatiensis RL [AIJQ]
30474
30382
-
Ser
GCT
[ENA]
¡û
>W1610045345
BBBL01000541
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
401
493
+
Ser
GCT
[ENA]
¡û
>W1610045409
BBBN01000135
Deinococcota
Thermus sp. JCM 17653 [BBBN]
734
642
-
Ser
GCT
[ENA]
¡û
>C131002383
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
66284
66376
+
Ser
GCT
[Ensembl]
¡û
>W1710042186
BBBL01000541
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
401
493
+
Ser
GCT
[ENA]
¡û
>W1710042250
BBBN01000135
Deinococcota
Thermus sp. JCM 17653 [BBBN]
734
642
-
Ser
GCT
[ENA]
¡û
>W1710514632
FNBC01000002
Deinococcota
Thermus arciformis [FNBC]
73689
73597
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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