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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95644 (130 seq.)
>W1711228138
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
12942
13026
+
Tyr
GTA
[ENA]
¡û
>W1711302762
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
36813
36897
+
Tyr
GTA
[ENA]
¡û
>W1711302792
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36824
36740
-
Tyr
GTA
[ENA]
¡û
>W1711306336
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
36839
36923
+
Tyr
GTA
[ENA]
¡û
>W1711306362
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36839
36755
-
Tyr
GTA
[ENA]
¡û
>W1711307551
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50538
50622
+
Tyr
GTA
[ENA]
¡û
>W1711307576
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
14138
14054
-
Tyr
GTA
[ENA]
¡û
>W1711307618
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42661
42745
+
Tyr
GTA
[ENA]
¡û
>W1711307646
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36838
36754
-
Tyr
GTA
[ENA]
¡û
>W1711307685
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
9152
9236
+
Tyr
GTA
[ENA]
¡û
>W1711307712
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43132
43216
+
Tyr
GTA
[ENA]
¡û
>W131001376
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
266680
266764
+
Tyr
GTA
[ENA]
¡û
>W131171371
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
166498
166414
-
Tyr
GTA
[ENA]
¡û
>WENV180118449
OASD01000003
[OASD] human gut metagenome; ENVO:feces
168109
168193
+
Tyr
GTA
[ENA]
¢þ
>WENV180198226
OBAC01009196
[OBAC] human gut metagenome; ENVO:feces
27
111
+
Tyr
GTA
[ENA]
¢þ
>WENV180222866
OBBE01061477
[OBBE] human gut metagenome; human gut
117
33
-
Tyr
GTA
[ENA]
¢þ
>WENV180403317
OBRT01000001
[OBRT] human gut metagenome; ENVO:feces
141730
141814
+
Tyr
GTA
[ENA]
¢þ
>WENV180405228
OBTM01000046
[OBTM] human gut metagenome; ENVO:feces
7612
7696
+
Tyr
GTA
[ENA]
¢þ
>WENV180544709
OCIR01003308
[OCIR] human gut metagenome; human gut
1757
1673
-
Tyr
GTA
[ENA]
¢þ
>WENV180597031
OCPK01000728
[OCPK] human gut metagenome; ENVO:feces
4113
4029
-
Tyr
GTA
[ENA]
¢þ
>WENV180597369
OCPL01000050
[OCPL] human gut metagenome; ENVO:feces
9874
9958
+
Tyr
GTA
[ENA]
¢þ
>WENV180697987
ODDE01017256
[ODDE] human metagenome; G_DNA_Supragingival plaque
360
444
+
Tyr
GTA
[ENA]
¢þ
>WENV180698527
ODDH01011336
[ODDH] human metagenome; G_DNA_Buccal mucosa
295
211
-
Tyr
GTA
[ENA]
¢þ
>WENV180732317
ODGY01000128
[ODGY] human metagenome; G_DNA_Supragingival plaque
8641
8725
+
Tyr
GTA
[ENA]
¢þ
>WENV180733788
ODGZ01000792
[ODGZ] human metagenome; G_DNA_Supragingival plaque
11637
11721
+
Tyr
GTA
[ENA]
¢þ
>WENV180739208
ODHD01015083
[ODHD] human metagenome; G_DNA_Supragingival plaque
330
246
-
Tyr
GTA
[ENA]
¢þ
>WENV180764853
ODIB01002373
[ODIB] human metagenome; G_DNA_Supragingival plaque
2095
2011
-
Tyr
GTA
[ENA]
¢þ
>WENV180785718
ODIR01024397
[ODIR] human metagenome; G_DNA_Stool
82
166
+
Tyr
GTA
[ENA]
¢þ
>WENV180797571
ODJB01078483
[ODJB] human metagenome; G_DNA_Supragingival plaque
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV180809388
ODJK01014907
[ODJK] human metagenome; G_DNA_Subgingival plaque
1267
1183
-
Tyr
GTA
[ENA]
¢þ
>WENV180813473
ODJO01000816
[ODJO] human metagenome; G_DNA_Supragingival plaque
13531
13447
-
Tyr
GTA
[ENA]
¢þ
>WENV180843560
ODKN01005182
[ODKN] human metagenome; G_DNA_Supragingival plaque
2802
2886
+
Tyr
GTA
[ENA]
¢þ
>WENV180847895
ODKT01232696
[ODKT] human metagenome; G_DNA_Supragingival plaque
128
212
+
Tyr
GTA
[ENA]
¢þ
>WENV180860300
ODLD01043026
[ODLD] human metagenome; G_DNA_Supragingival plaque
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV180889035
ODMN01010240
[ODMN] human metagenome; G_DNA_Supragingival plaque
1088
1004
-
Tyr
GTA
[ENA]
¢þ
>WENV180922195
ODTJ01001790
[ODTJ] human metagenome; G_DNA_Supragingival plaque
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV180940083
ODTX01216368
[ODTX] human metagenome; G_DNA_Supragingival plaque
101
185
+
Tyr
GTA
[ENA]
¢þ
>WENV180951456
ODUH01024974
[ODUH] human metagenome; G_DNA_Subgingival plaque
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV180964728
ODUO01014122
[ODUO] human metagenome; G_DNA_Supragingival plaque
840
756
-
Tyr
GTA
[ENA]
¢þ
>WENV180975179
ODUY01002372
[ODUY] human metagenome; G_DNA_Supragingival plaque
5769
5685
-
Tyr
GTA
[ENA]
¢þ
>WENV180983090
ODVF01003399
[ODVF] human metagenome; G_DNA_Supragingival plaque
535
619
+
Tyr
GTA
[ENA]
¢þ
>WENV180987623
ODVK01057155
[ODVK] human metagenome; G_DNA_Supragingival plaque
139
223
+
Tyr
GTA
[ENA]
¢þ
>WENV180998423
ODVT01000342
[ODVT] human metagenome; G_DNA_Buccal mucosa
27627
27543
-
Tyr
GTA
[ENA]
¢þ
>WENV181019184
ODWU01001036
[ODWU] human metagenome; G_DNA_Supragingival plaque
13644
13560
-
Tyr
GTA
[ENA]
¢þ
>WENV181050019
ODYD01004652
[ODYD] human metagenome; G_DNA_Supragingival plaque
1655
1571
-
Tyr
GTA
[ENA]
¢þ
>WENV181064771
ODYP01091207
[ODYP] human metagenome; G_DNA_Supragingival plaque
101
17
-
Tyr
GTA
[ENA]
¢þ
>WENV181066646
ODZI01000654
[ODZI] human metagenome; G_DNA_Supragingival plaque
4909
4825
-
Tyr
GTA
[ENA]
¢þ
>WENV181077821
OEAP01162778
[OEAP] human metagenome; G_DNA_Supragingival plaque
129
213
+
Tyr
GTA
[ENA]
¢þ
>WENV181081466
OEAS01218118
[OEAS] human metagenome; G_DNA_Supragingival plaque
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV181090685
OEBC01002355
[OEBC] human metagenome; G_DNA_Supragingival plaque
6313
6229
-
Tyr
GTA
[ENA]
¢þ
>WENV181137613
OEGJ01009477
[OEGJ] human metagenome; G_DNA_Supragingival plaque
806
890
+
Tyr
GTA
[ENA]
¢þ
>WENV181146928
OEHQ01043852
[OEHQ] human metagenome; G_DNA_Supragingival plaque
440
524
+
Tyr
GTA
[ENA]
¢þ
>WENV181177794
OEJS01017766
[OEJS] human metagenome; G_DNA_Supragingival plaque
840
756
-
Tyr
GTA
[ENA]
¢þ
>WENV181181162
OEJU01007670
[OEJU] human metagenome; G_DNA_Supragingival plaque
376
460
+
Tyr
GTA
[ENA]
¢þ
>WENV181200833
OERL01013657
[OERL] metagenome; Caecal content
31
115
+
Tyr
GTA
[ENA]
¢þ
>WENV181203601
OERW01004429
[OERW] metagenome; Caecal content
122
38
-
Tyr
GTA
[ENA]
¢þ
>WENV181304172
OFHW01003636
[OFHW] metagenome; Caecal content
18
102
+
Tyr
GTA
[ENA]
¢þ
>WENV181804447
OGSF01000880
[OGSF] human gut metagenome; fecal sample 3 from infant 5
2035
2119
+
Tyr
GTA
[ENA]
¢þ
>WENV181806404
OGSK01004020
[OGSK] human gut metagenome; fecal sample 2 from infant 5
613
697
+
Tyr
GTA
[ENA]
¢þ
>WENV181811222
OGSY01000288
[OGSY] human gut metagenome; fecal sample 5 from infant 8
23496
23412
-
Tyr
GTA
[ENA]
¢þ
>WENV181821342
OGUE01000731
[OGUE] human gut metagenome; fecal sample 1 from infant 5
1703
1619
-
Tyr
GTA
[ENA]
¢þ
>W08010291
ABQS01000049
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
15192
15111
-
Tyr
GTA
[ENA]
¡û
>W08010356
ABQU01000022
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
38759
38678
-
Tyr
GTA
[ENA]
¡û
>C08003183
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1595810
1595729
-
Tyr
GTA
[Ensembl]
¡û
>WENV182644363
OJLW01027302
[OJLW] metagenome; surface
496
580
+
Tyr
GTA
[ENA]
¢þ
>WENV183073920
OLIU01003054
[OLIU] human gut metagenome; stool sample
2927
3011
+
Tyr
GTA
[ENA]
¢þ
>WENV170635950
JFBN01012145
[JFBN] chicken gut metagenome; ceca of Broiler chicken
36877
36793
-
Tyr
GTA
[ENA]
¢þ
>WENV170716854
LSQX01014191
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1776
1860
+
Tyr
GTA
[ENA]
¢þ
>W141451043
JFAP01000004
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
208045
207961
-
Tyr
GTA
[ENA]
¡û
>W141463418
JFJK01000009
Campylobacterota
Campylobacter ureolyticus [JFJK]
103107
103023
-
Tyr
GTA
[ENA]
¡û
>W09119166
ACDO01000007
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
10852
10768
-
Tyr
GTA
[ENA]
¡û
>W09134328
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
142844
142928
+
Tyr
GTA
[ENA]
¡û
>C181054483
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1650826
1650910
+
Tyr
GTA
-
¡û
>C191213253
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1534028
1533944
-
Tyr
GTA
-
¡û
>W141558673
JHWC01000007
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
78224
78308
+
Tyr
GTA
[ENA]
¡û
>W1910546589
FZMV01000006
Campylobacterota
Helicobacter pullorum [FZMV]
36821
36737
-
Tyr
GTA
[ENA]
¡û
>W1910546666
FZMX01000008
Campylobacterota
Helicobacter pullorum [FZMX]
35845
35761
-
Tyr
GTA
[ENA]
¡û
>W1910549566
FZPJ01000006
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
84030
83946
-
Tyr
GTA
[ENA]
¡û
>W1910549729
FZPN01000011
Campylobacterota
Helicobacter canadensis [FZPN]
28886
28802
-
Tyr
GTA
[ENA]
¡û
>W1910584329
JXTX01000005
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
41124
41040
-
Tyr
GTA
[ENA]
¡û
>W1910663813
MBPH01000035
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
77592
77676
+
Tyr
GTA
[ENA]
¡û
>W1910663849
MBPI01000033
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
77616
77700
+
Tyr
GTA
[ENA]
¡û
>W1910663886
MBPJ01000041
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
73509
73593
+
Tyr
GTA
[ENA]
¡û
>W1910663922
MBPK01000042
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
73512
73596
+
Tyr
GTA
[ENA]
¡û
>W1910663956
MBPL01000044
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
73512
73596
+
Tyr
GTA
[ENA]
¡û
>W1910852890
NBIU01000003
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
67302
67386
+
Tyr
GTA
[ENA]
¡û
>W1910914952
NHYL01000001
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
558172
558256
+
Tyr
GTA
[ENA]
¡û
>W1911770843
QXJG01000004
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
51439
51523
+
Tyr
GTA
[ENA]
¡û
>W1810046640
NXLS01000008
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
36098
36014
-
Tyr
GTA
[ENA]
¡û
>W1810056858
PDHH01000004
Campylobacterota
Campylobacter blaseri 17S00004-5 [PDHH]
172886
172802
-
Tyr
GTA
[ENA]
¡û
>W1810056895
PDHI01000004
Campylobacterota
Campylobacter blaseri 17S00008-12 [PDHI]
172868
172784
-
Tyr
GTA
[ENA]
¡û
>W1810187712
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
65382
65298
-
Tyr
GTA
[ENA]
¡û
>C151068910
CP010435
Campylobacterota
Helicobacter pylori 26695-1 [CP010435]
1282127
1282043
-
Tyr
GTA
[Ensembl]
¡û
>C151092530
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1280693
1280609
-
Tyr
GTA
-
¡û
>C151092568
CP012196
Campylobacterota
Campylobacter gracilis ATCC 33236 [CP012196]
1670477
1670393
-
Tyr
GTA
-
¡û
>W10106120
ACYG01000028
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
27209
27125
-
Tyr
GTA
[ENA]
¡û
>W11108443
ACYG01000028
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
27209
27125
-
Tyr
GTA
[ENA]
¡û
>W1511353172
JRPA01000144
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
277
193
-
Tyr
GTA
[ENA]
¡û
>W1511353222
JRPB01000007
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
1882
1798
-
Tyr
GTA
[ENA]
¡û
>W1511353244
JRPC01000040
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
11114
11198
+
Tyr
GTA
[ENA]
¡û
>C161001205
AP014710
Campylobacterota
Helicobacter pylori ML1 [AP014710]
146525
146609
+
Tyr
GTA
-
¡û
>W1610164347
FAUX01000005
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAUX]
47704
47788
+
Tyr
GTA
[ENA]
¡û
>W1610419714
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102211
102295
+
Tyr
GTA
[ENA]
¡û
>W1610419759
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105821
105737
-
Tyr
GTA
[ENA]
¡û
>W1610419787
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
102053
102137
+
Tyr
GTA
[ENA]
¡û
>W1610522063
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36781
36697
-
Tyr
GTA
[ENA]
¡û
>W1610522098
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
36889
36805
-
Tyr
GTA
[ENA]
¡û
>W1610522133
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36837
36753
-
Tyr
GTA
[ENA]
¡û
>W1610522221
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36828
36744
-
Tyr
GTA
[ENA]
¡û
>W1610665911
LJXM01000002
Campylobacterota
Helicobacter pylori [LJXM]
32966
33050
+
Tyr
GTA
[ENA]
¡û
>W1610720633
LMBF01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
3511
3427
-
Tyr
GTA
[ENA]
¡û
>W1610720751
LMBI01000006
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
18575
18491
-
Tyr
GTA
[ENA]
¡û
>W1611012055
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
12942
13026
+
Tyr
GTA
[ENA]
¡û
>W1611053087
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
36813
36897
+
Tyr
GTA
[ENA]
¡û
>W1611053117
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
36824
36740
-
Tyr
GTA
[ENA]
¡û
>W1611055690
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
36839
36923
+
Tyr
GTA
[ENA]
¡û
>W1611055716
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
36839
36755
-
Tyr
GTA
[ENA]
¡û
>W1611055834
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
50538
50622
+
Tyr
GTA
[ENA]
¡û
>W1611055859
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
14138
14054
-
Tyr
GTA
[ENA]
¡û
>W1611055901
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42661
42745
+
Tyr
GTA
[ENA]
¡û
>W1611055929
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
36838
36754
-
Tyr
GTA
[ENA]
¡û
>W1611055968
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
9152
9236
+
Tyr
GTA
[ENA]
¡û
>W1611055995
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43132
43216
+
Tyr
GTA
[ENA]
¡û
>W1710419450
FIZO01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
102211
102295
+
Tyr
GTA
[ENA]
¡û
>W1710419495
FIZP01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
105821
105737
-
Tyr
GTA
[ENA]
¡û
>W1710419523
FIZQ01000004
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
102053
102137
+
Tyr
GTA
[ENA]
¡û
>W1710621989
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36781
36697
-
Tyr
GTA
[ENA]
¡û
>W1710622024
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
36889
36805
-
Tyr
GTA
[ENA]
¡û
>W1710622059
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
36837
36753
-
Tyr
GTA
[ENA]
¡û
>W1710622147
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36828
36744
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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