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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95870 (95 seq.)
>W1710799886
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
35205
35289
+
Leu
TAA
[ENA]
¡û
>W1710799889
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
35634
35718
+
Leu
TAA
[ENA]
¡û
>W1710799891
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
36199
36283
+
Leu
TAA
[ENA]
¡û
>W1710803996
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
298646
298562
-
Leu
TAA
[ENA]
¡û
>W1710803999
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
298060
297976
-
Leu
TAA
[ENA]
¡û
>W1710804001
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
297618
297534
-
Leu
TAA
[ENA]
¡û
>W131177276
ARKQ01000050
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
126605
126689
+
Leu
TAA
[ENA]
¡û
>W131177279
ARKQ01000050
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
127028
127112
+
Leu
TAA
[ENA]
¡û
>W131177281
ARKQ01000050
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
127463
127547
+
Leu
TAA
[ENA]
¡û
>W1711947619
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
1009900
1009816
-
Leu
TAA
[ENA]
¡û
>W1711947622
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
1009482
1009398
-
Leu
TAA
[ENA]
¡û
>W1711947624
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
1009202
1009118
-
Leu
TAA
[ENA]
¡û
>W1711947626
NBOF01000001
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
1008922
1008838
-
Leu
TAA
[ENA]
¡û
>C006838
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3398507
3398423
-
Leu
TAA
[Ensembl]
¡û
>C006841
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3398085
3398001
-
Leu
TAA
[Ensembl]
¡û
>C006843
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3397752
3397668
-
Leu
TAA
[Ensembl]
¡û
>WENV180109939
OAPL01012869
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
127
43
-
Leu
TAA
[ENA]
¢þ
>WENV180396854
OBPW01016281
[OBPW] marine metagenome; seawater
191
107
-
Leu
TAA
[ENA]
¢þ
>WENV182543422
OJBB01000125
[OJBB] seawater metagenome; Sea water
29087
29003
-
Leu
TAA
[ENA]
¢þ
>WENV182544626
OJBI01000306
[OJBI] seawater metagenome; Sea water
6660
6744
+
Leu
TAA
[ENA]
¢þ
>WENV182545103
OJBM01000094
[OJBM] seawater metagenome; Sea water
204
120
-
Leu
TAA
[ENA]
¢þ
>WENV182547089
OJBR01000856
[OJBR] seawater metagenome; Sea water
9061
8977
-
Leu
TAA
[ENA]
¢þ
>WENV182549223
OJBY01000012
[OJBY] seawater metagenome; Sea water
154540
154456
-
Leu
TAA
[ENA]
¢þ
>WENV182560608
OJDU01010016
[OJDU] seawater metagenome; Sea water
169
85
-
Leu
TAA
[ENA]
¢þ
>WENV182567462
OJEO01001465
[OJEO] seawater metagenome; Sea water
1239
1155
-
Leu
TAA
[ENA]
¢þ
>WENV182567740
OJEP01000090
[OJEP] seawater metagenome; Sea water
12002
12086
+
Leu
TAA
[ENA]
¢þ
>WENV182568841
OJEX01000045
[OJEX] seawater metagenome; Sea water
6841
6757
-
Leu
TAA
[ENA]
¢þ
>WENV182575361
OJFU01008883
[OJFU] seawater metagenome; Sea water
127
211
+
Leu
TAA
[ENA]
¢þ
>WENV182578505
OJGO01000293
[OJGO] seawater metagenome; Sea water
20943
20859
-
Leu
TAA
[ENA]
¢þ
>WENV182578831
OJGP01005775
[OJGP] seawater metagenome; Sea water
650
566
-
Leu
TAA
[ENA]
¢þ
>WENV182580603
OJGW01004555
[OJGW] seawater metagenome; Sea water
3686
3602
-
Leu
TAA
[ENA]
¢þ
>WENV182588316
OJHR01002403
[OJHR] seawater metagenome; Sea water
87
3
-
Leu
TAA
[ENA]
¢þ
>WENV182590615
OJIJ01000379
[OJIJ] seawater metagenome; Sea water
5787
5871
+
Leu
TAA
[ENA]
¢þ
>WENV183055728
OLHF01000351
[OLHF] seawater metagenome; Sea water
3577
3661
+
Leu
TAA
[ENA]
¢þ
>WENV183056567
OLHJ01001035
[OLHJ] seawater metagenome; Sea water
6440
6524
+
Leu
TAA
[ENA]
¢þ
>WENV183065072
OLII01017095
[OLII] seawater metagenome; Sea water
1226
1310
+
Leu
TAA
[ENA]
¢þ
>WENV170537104
CEWQ01002950
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
85
169
+
Leu
TAA
[ENA]
¢þ
>WENV170704331
LLEJ01003571
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
176
260
+
Leu
TAA
[ENA]
¢þ
>WENV170704774
LLEM01011252
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
126
42
-
Leu
TAA
[ENA]
¢þ
>WENV170780333
MAAA01028787
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1412
1496
+
Leu
TAA
[ENA]
¢þ
>WENV170781007
MAAB01029024
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
7584
7668
+
Leu
TAA
[ENA]
¢þ
>WENV170781010
MAAB01029024
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
8120
8204
+
Leu
TAA
[ENA]
¢þ
>WENV170781012
MAAB01029024
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
8455
8539
+
Leu
TAA
[ENA]
¢þ
>WENV170781052
MAAB01029213
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
101625
101709
+
Leu
TAA
[ENA]
¢þ
>WENV170781055
MAAB01029213
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
102230
102314
+
Leu
TAA
[ENA]
¢þ
>WENV170781107
MAAB01029407
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
5710
5794
+
Leu
TAA
[ENA]
¢þ
>WENV170781109
MAAB01029407
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6031
6115
+
Leu
TAA
[ENA]
¢þ
>WENV170781159
MAAB01029582
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
30
114
+
Leu
TAA
[ENA]
¢þ
>WENV170781162
MAAB01029582
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
449
533
+
Leu
TAA
[ENA]
¢þ
>WENV170781164
MAAB01029582
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
738
822
+
Leu
TAA
[ENA]
¢þ
>WENV170781263
MAAB01030462
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
33
117
+
Leu
TAA
[ENA]
¢þ
>WENV170781300
MAAB01031564
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
473
389
-
Leu
TAA
[ENA]
¢þ
>WENV170782895
MAAC01011851
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
17307
17223
-
Leu
TAA
[ENA]
¢þ
>WENV170782924
MAAC01012088
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12213
12297
+
Leu
TAA
[ENA]
¢þ
>WENV170782927
MAAC01012088
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
12762
12846
+
Leu
TAA
[ENA]
¢þ
>WENV170782929
MAAC01012088
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
13173
13257
+
Leu
TAA
[ENA]
¢þ
>WENV170783136
MAAC01014120
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
27
111
+
Leu
TAA
[ENA]
¢þ
>WENV170783138
MAAC01014120
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
316
400
+
Leu
TAA
[ENA]
¢þ
>WENV170783240
MAAC01015266
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5083
5167
+
Leu
TAA
[ENA]
¢þ
>WENV170783243
MAAC01015266
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5534
5618
+
Leu
TAA
[ENA]
¢þ
>WENV170783251
MAAC01015387
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
22369
22285
-
Leu
TAA
[ENA]
¢þ
>WENV170783254
MAAC01015387
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
21833
21749
-
Leu
TAA
[ENA]
¢þ
>WENV170783256
MAAC01015387
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
21498
21414
-
Leu
TAA
[ENA]
¢þ
>W1810155104
PJAI01000084
Gammaproteobacteria
Colwellia echini A3T [PJAI]
96139
96055
-
Leu
TAA
[ENA]
¡û
>W1810155107
PJAI01000084
Gammaproteobacteria
Colwellia echini A3T [PJAI]
95526
95442
-
Leu
TAA
[ENA]
¡û
>W1810155109
PJAI01000084
Gammaproteobacteria
Colwellia echini A3T [PJAI]
95240
95156
-
Leu
TAA
[ENA]
¡û
>W1810155338
PJAQ01000015
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
12252
12336
+
Leu
TAA
[ENA]
¡û
>W1810155341
PJAQ01000015
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
12829
12913
+
Leu
TAA
[ENA]
¡û
>W1810155343
PJAQ01000015
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
13158
13242
+
Leu
TAA
[ENA]
¡û
>W1810155575
PJAU01000056
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
173497
173413
-
Leu
TAA
[ENA]
¡û
>W1810155578
PJAU01000056
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
173038
172954
-
Leu
TAA
[ENA]
¡û
>W1810155580
PJAU01000056
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
172767
172683
-
Leu
TAA
[ENA]
¡û
>W1810155582
PJAU01000056
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
172315
172231
-
Leu
TAA
[ENA]
¡û
>W1810155987
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
727580
727664
+
Leu
TAA
[ENA]
¡û
>W1810155990
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
728002
728086
+
Leu
TAA
[ENA]
¡û
>W1810155992
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
728336
728420
+
Leu
TAA
[ENA]
¡û
>W1810735897
QOLD01000063
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
3288
3204
-
Leu
TAA
[ENA]
¡û
>W1810735900
QOLD01000063
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
2785
2701
-
Leu
TAA
[ENA]
¡û
>W1511322922
JQEC01000075
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
91828
91912
+
Leu
TAA
[ENA]
¡û
>W1511322925
JQEC01000075
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
92385
92469
+
Leu
TAA
[ENA]
¡û
>W1511322927
JQEC01000075
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
92716
92800
+
Leu
TAA
[ENA]
¡û
>W1511322997
JQED01000056
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
93800
93884
+
Leu
TAA
[ENA]
¡û
>W1511323000
JQED01000056
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
94219
94303
+
Leu
TAA
[ENA]
¡û
>W1511323002
JQED01000056
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
94506
94590
+
Leu
TAA
[ENA]
¡û
>C161052231
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1506598
1506682
+
Leu
TAA
[Ensembl]
¡û
>C161052234
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1507314
1507398
+
Leu
TAA
[Ensembl]
¡û
>C161052236
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1507889
1507973
+
Leu
TAA
[Ensembl]
¡û
>W1610663843
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
35205
35289
+
Leu
TAA
[ENA]
¡û
>W1610663846
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
35634
35718
+
Leu
TAA
[ENA]
¡û
>W1610663848
LJVG01000016
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
36199
36283
+
Leu
TAA
[ENA]
¡û
>W1610667853
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
298646
298562
-
Leu
TAA
[ENA]
¡û
>W1610667856
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
298060
297976
-
Leu
TAA
[ENA]
¡û
>W1610667858
LJYX01000017
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
297618
297534
-
Leu
TAA
[ENA]
¡û
>W1710087363
BDQM01000038
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
34837
34921
+
Leu
TAA
[ENA]
¡û
>W1710087366
BDQM01000038
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
35266
35350
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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