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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = GGT
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268407 (1 seq.)
>SRA1017505
SRR035082.151136
454 Sequencing (SRP001803)
246
320
+
Thr
GGT
[SRA]
Identical group No.271848 (10 seq.)
>WENV170621134
FUWD013050026
[FUWD] metagenome; unknown
155
231
+
Thr
GGT
[ENA]
¢þ
>WENV170629303
FUWD013266719
[FUWD] metagenome; unknown
155
231
+
Thr
GGT
[ENA]
¢þ
>WENV170677101
LDZT01002448
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1384
1460
+
Thr
GGT
[ENA]
¢þ
>WENV170678014
LDZT01010412
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1415
1339
-
Thr
GGT
[ENA]
¢þ
>SRA1017819
SRR035082.202293
454 Sequencing (SRP001803)
283
359
+
Thr
GGT
[SRA]
>SRA1030147
SRR035087.233683
454 Sequencing (SRP001808)
346
270
-
Thr
GGT
[SRA]
>SRA1042043
SRR035091.331815
454 Sequencing (SRP001812)
522
446
-
Thr
GGT
[SRA]
>SRA1050636
SRR035095.310644
454 Sequencing (SRP001816)
165
241
+
Thr
GGT
[SRA]
>W1610613999
LGGO01000180
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
1415
1339
-
Thr
GGT
[ENA]
¡û
>W1710735082
LGGO01000180
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
1415
1339
-
Thr
GGT
[ENA]
¡û
Identical group No.272875 (3 seq.)
>WENV170612332
FUWD012578550
[FUWD] metagenome; unknown
260
186
-
Thr
GGT
[ENA]
¢þ
>SRA1019286
SRR035082.429180
454 Sequencing (SRP001803)
19
93
+
Thr
GGT
[SRA]
>SRA1036322
SRR035089.494192
454 Sequencing (SRP001810)
259
185
-
Thr
GGT
[SRA]
Identical group No.357786 (4 seq.)
>WENV170605021
FUWD010441653
[FUWD] metagenome; unknown
232
305
+
Thr
GGT
[ENA]
¢þ
>SRA1017443
SRR035082.139595
454 Sequencing (SRP001803)
230
303
+
Thr
GGT
[SRA]
>SRA1019740
SRR035082.516324
454 Sequencing (SRP001803)
265
338
+
Thr
GGT
[SRA]
>SRA1043748
SRR035092.170226
454 Sequencing (SRP001813)
50
123
+
Thr
GGT
[SRA]
Identical group No.439668 (2 seq.)
>SRA1017031
SRR035082.70106
454 Sequencing (SRP001803)
197
270
+
Thr
GGT
[SRA]
>SRA1017631
SRR035082.171486
454 Sequencing (SRP001803)
243
170
-
Thr
GGT
[SRA]
Identical group No.439695 (1 seq.)
>SRA1017320
SRR035082.119081
454 Sequencing (SRP001803)
332
405
+
Thr
GGT
[SRA]
Identical group No.439854 (1 seq.)
>SRA1019016
SRR035082.386863
454 Sequencing (SRP001803)
278
351
+
Thr
GGT
[SRA]
Identical group No.439931 (1 seq.)
>SRA1019783
SRR035082.530686
454 Sequencing (SRP001803)
151
227
+
Thr
GGT
[SRA]
Identical group No.453239 (6 seq.)
>WENV170622253
FUWD013094317
[FUWD] metagenome; unknown
96
169
+
Thr
GGT
[ENA]
¢þ
>WENV170630474
FUWD013309054
[FUWD] metagenome; unknown
96
169
+
Thr
GGT
[ENA]
¢þ
>SRA1019195
SRR035082.416889
454 Sequencing (SRP001803)
350
275
-
Thr
GGT
[SRA]
>SRA1025593
SRR035085.44480
454 Sequencing (SRP001806)
109
182
+
Thr
GGT
[SRA]
>SRA1040896
SRR035091.165183
454 Sequencing (SRP001812)
50
123
+
Thr
GGT
[SRA]
>SRA1041294
SRR035091.224436
454 Sequencing (SRP001812)
49
122
+
Thr
GGT
[SRA]
Identical group No.453317 (9 seq.)
>WENV170600332
FUWD010120595
[FUWD] metagenome; unknown
406
481
+
Thr
GGT
[ENA]
¢þ
>WENV170626228
FUWD013217083
[FUWD] metagenome; unknown
911
986
+
Thr
GGT
[ENA]
¢þ
>SRA1017854
SRR035082.206952
454 Sequencing (SRP001803)
194
269
+
Thr
GGT
[SRA]
>SRA1025982
SRR035085.120747
454 Sequencing (SRP001806)
144
69
-
Thr
GGT
[SRA]
>SRA1026155
SRR035085.154668
454 Sequencing (SRP001806)
310
385
+
Thr
GGT
[SRA]
>SRA1031574
SRR035087.452130
454 Sequencing (SRP001808)
197
122
-
Thr
GGT
[SRA]
>SRA1036596
SRR035089.558406
454 Sequencing (SRP001810)
191
116
-
Thr
GGT
[SRA]
>SRA1044085
SRR035092.222005
454 Sequencing (SRP001813)
292
217
-
Thr
GGT
[SRA]
>SRA1049157
SRR035095.30023
454 Sequencing (SRP001816)
236
311
+
Thr
GGT
[SRA]
Identical group No.484739 (7 seq.)
>WENV170620107
FUWD013025998
[FUWD] metagenome; unknown
478
403
-
Thr
GGT
[ENA]
¢þ
>WENV170627264
FUWD013232453
[FUWD] metagenome; unknown
12295
12220
-
Thr
GGT
[ENA]
¢þ
>WENV170628238
FUWD013243868
[FUWD] metagenome; unknown
478
403
-
Thr
GGT
[ENA]
¢þ
>SRA1017322
SRR035082.119203
454 Sequencing (SRP001803)
17
92
+
Thr
GGT
[SRA]
>SRA1044787
SRR035092.344144
454 Sequencing (SRP001813)
35
110
+
Thr
GGT
[SRA]
>SRA1047167
SRR035093.474226
454 Sequencing (SRP001814)
147
72
-
Thr
GGT
[SRA]
>SRA1050631
SRR035095.309878
454 Sequencing (SRP001816)
95
20
-
Thr
GGT
[SRA]
Identical group No.548269 (2 seq.)
>WENV170611491
FUWD012330915
[FUWD] metagenome; unknown
243
168
-
Thr
GGT
[ENA]
¢þ
>SRA1016970
SRR035082.62025
454 Sequencing (SRP001803)
420
345
-
Thr
GGT
[SRA]
Identical group No.548300 (3 seq.)
>WENV170611690
FUWD012375878
[FUWD] metagenome; unknown
374
449
+
Thr
GGT
[ENA]
¢þ
>SRA1019615
SRR035082.489909
454 Sequencing (SRP001803)
377
452
+
Thr
GGT
[SRA]
>SRA1041064
SRR035091.190765
454 Sequencing (SRP001812)
263
338
+
Thr
GGT
[SRA]
Identical group No.548777 (3 seq.)
>WENV170622239
FUWD013093762
[FUWD] metagenome; unknown
977
902
-
Thr
GGT
[ENA]
¢þ
>WENV170630451
FUWD013308610
[FUWD] metagenome; unknown
977
902
-
Thr
GGT
[ENA]
¢þ
>SRA1017577
SRR035082.163037
454 Sequencing (SRP001803)
20
95
+
Thr
GGT
[SRA]
Identical group No.551001 (3 seq.)
>SRA1018832
SRR035082.354470
454 Sequencing (SRP001803)
112
187
+
Thr
GGT
[SRA]
>W1610586449
LDIV01000001
Unclassified
candidate division TM6 bacterium UASB124 [LDIV]
442367
442292
-
Thr
GGT
[ENA]
¡û
>W1710705579
LDIV01000001
Unclassified
candidate division TM6 bacterium UASB124 [LDIV]
442367
442292
-
Thr
GGT
[ENA]
¡û
Identical group No.640008 (1 seq.)
>SRA1017457
SRR035082.142519
454 Sequencing (SRP001803)
403
328
-
Thr
GGT
[SRA]
Identical group No.640012 (1 seq.)
>SRA1017502
SRR035082.151078
454 Sequencing (SRP001803)
313
238
-
Thr
GGT
[SRA]
Identical group No.640019 (1 seq.)
>SRA1017552
SRR035082.160817
454 Sequencing (SRP001803)
357
432
+
Thr
GGT
[SRA]
Identical group No.640081 (1 seq.)
>SRA1018130
SRR035082.244319
454 Sequencing (SRP001803)
91
166
+
Thr
GGT
[SRA]
Identical group No.640135 (1 seq.)
>SRA1018709
SRR035082.335846
454 Sequencing (SRP001803)
174
99
-
Thr
GGT
[SRA]
Identical group No.640145 (1 seq.)
>SRA1018797
SRR035082.348406
454 Sequencing (SRP001803)
345
420
+
Thr
GGT
[SRA]
Identical group No.640147 (1 seq.)
>SRA1018806
SRR035082.350426
454 Sequencing (SRP001803)
310
382
+
Thr
GGT
[SRA]
Identical group No.640161 (1 seq.)
>SRA1019037
SRR035082.389942
454 Sequencing (SRP001803)
446
518
+
Thr
GGT
[SRA]
Identical group No.640191 (1 seq.)
>SRA1019343
SRR035082.437678
454 Sequencing (SRP001803)
199
126
-
Thr
GGT
[SRA]
Identical group No.640203 (1 seq.)
>SRA1019505
SRR035082.467825
454 Sequencing (SRP001803)
118
43
-
Thr
GGT
[SRA]
Identical group No.654242 (7 seq.)
>WENV170618286
FUWD012960919
[FUWD] metagenome; unknown
128
54
-
Thr
GGT
[ENA]
¢þ
>WENV170626712
FUWD013229048
[FUWD] metagenome; unknown
233
159
-
Thr
GGT
[ENA]
¢þ
>SRA1017209
SRR035082.99364
454 Sequencing (SRP001803)
128
54
-
Thr
GGT
[SRA]
>SRA1025543
SRR035085.36099
454 Sequencing (SRP001806)
315
389
+
Thr
GGT
[SRA]
>SRA1025811
SRR035085.87651
454 Sequencing (SRP001806)
313
387
+
Thr
GGT
[SRA]
>SRA1028958
SRR035087.46425
454 Sequencing (SRP001808)
211
137
-
Thr
GGT
[SRA]
>SRA1049323
SRR035095.56686
454 Sequencing (SRP001816)
168
94
-
Thr
GGT
[SRA]
Identical group No.654283 (9 seq.)
>WENV170605001
FUWD010440867
[FUWD] metagenome; unknown
314
242
-
Thr
GGT
[ENA]
¢þ
>WENV170623311
FUWD013145538
[FUWD] metagenome; unknown
205
133
-
Thr
GGT
[ENA]
¢þ
>WENV170631574
FUWD013357501
[FUWD] metagenome; unknown
205
133
-
Thr
GGT
[ENA]
¢þ
>SRA1018911
SRR035082.368978
454 Sequencing (SRP001803)
316
244
-
Thr
GGT
[SRA]
>SRA1025826
SRR035085.89432
454 Sequencing (SRP001806)
287
359
+
Thr
GGT
[SRA]
>SRA1029707
SRR035087.167642
454 Sequencing (SRP001808)
147
75
-
Thr
GGT
[SRA]
>SRA1035963
SRR035089.413375
454 Sequencing (SRP001810)
205
133
-
Thr
GGT
[SRA]
>SRA1043873
SRR035092.188790
454 Sequencing (SRP001813)
365
437
+
Thr
GGT
[SRA]
>SRA1047663
SRR035094.15486
454 Sequencing (SRP001815)
42
114
+
Thr
GGT
[SRA]
Identical group No.654587 (3 seq.)
>SRA1017623
SRR035082.169906
454 Sequencing (SRP001803)
102
174
+
Thr
GGT
[SRA]
>SRA1036017
SRR035089.427872
454 Sequencing (SRP001810)
285
357
+
Thr
GGT
[SRA]
>SRA1040101
SRR035091.38644
454 Sequencing (SRP001812)
118
190
+
Thr
GGT
[SRA]
Identical group No.672648 (3 seq.)
>WENV170604984
FUWD010439234
[FUWD] metagenome; unknown
140
212
+
Thr
GGT
[ENA]
¢þ
>SRA1017771
SRR035082.193907
454 Sequencing (SRP001803)
565
493
-
Thr
GGT
[SRA]
>SRA1032229
SRR035087.582720
454 Sequencing (SRP001808)
140
212
+
Thr
GGT
[SRA]
Identical group No.711565 (5 seq.)
>WENV170627122
FUWD013231498
[FUWD] metagenome; unknown
4957
5031
+
Thr
GGT
[ENA]
¢þ
>WENV170629815
FUWD013282622
[FUWD] metagenome; unknown
9437
9511
+
Thr
GGT
[ENA]
¢þ
>SRA1017025
SRR035082.69771
454 Sequencing (SRP001803)
253
327
+
Thr
GGT
[SRA]
>SRA1042531
SRR035091.403484
454 Sequencing (SRP001812)
77
3
-
Thr
GGT
[SRA]
>SRA1044368
SRR035092.267165
454 Sequencing (SRP001813)
423
349
-
Thr
GGT
[SRA]
Identical group No.771085 (1 seq.)
>SRA1016910
SRR035082.51260
454 Sequencing (SRP001803)
193
120
-
Thr
GGT
[SRA]
Identical group No.771098 (1 seq.)
>SRA1017060
SRR035082.73828
454 Sequencing (SRP001803)
211
282
+
Thr
GGT
[SRA]
Identical group No.771161 (1 seq.)
>SRA1017614
SRR035082.168237
454 Sequencing (SRP001803)
346
272
-
Thr
GGT
[SRA]
Identical group No.771266 (1 seq.)
>SRA1018751
SRR035082.342142
454 Sequencing (SRP001803)
400
472
+
Thr
GGT
[SRA]
Identical group No.771287 (1 seq.)
>SRA1018973
SRR035082.379788
454 Sequencing (SRP001803)
266
338
+
Thr
GGT
[SRA]
Identical group No.833581 (1 seq.)
>SRA1018691
SRR035082.333225
454 Sequencing (SRP001803)
393
320
-
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK