This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = TCG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268471 (1 seq.)
>SRA1019504
SRR035082.467619
454 Sequencing (SRP001803)
221
144
-
Arg
TCG
[SRA]
Identical group No.272449 (23 seq.)
>WENV181413199
OGCK01038251
[OGCK] hot springs metagenome; hot spring sediment
853
929
+
Arg
TCG
[ENA]
¢þ
>WENV170616588
FUWD012892690
[FUWD] metagenome; unknown
15
91
+
Arg
TCG
[ENA]
¢þ
>WENV170617548
FUWD012929501
[FUWD] metagenome; unknown
109
185
+
Arg
TCG
[ENA]
¢þ
>WENV170620355
FUWD013030264
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170624202
FUWD013177659
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170625247
FUWD013194035
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>WENV170628492
FUWD013247842
[FUWD] metagenome; unknown
1996
1920
-
Arg
TCG
[ENA]
¢þ
>WENV170632485
FUWD013383366
[FUWD] metagenome; unknown
348
272
-
Arg
TCG
[ENA]
¢þ
>WENV170633492
FUWD013396979
[FUWD] metagenome; unknown
2626
2702
+
Arg
TCG
[ENA]
¢þ
>SRA1017972
SRR035082.223176
454 Sequencing (SRP001803)
380
304
-
Arg
TCG
[SRA]
>SRA1018286
SRR035082.269545
454 Sequencing (SRP001803)
15
91
+
Arg
TCG
[SRA]
>SRA1018874
SRR035082.361764
454 Sequencing (SRP001803)
241
165
-
Arg
TCG
[SRA]
>SRA1026645
SRR035085.248989
454 Sequencing (SRP001806)
237
161
-
Arg
TCG
[SRA]
>SRA1029242
SRR035087.96635
454 Sequencing (SRP001808)
294
370
+
Arg
TCG
[SRA]
>SRA1029647
SRR035087.156066
454 Sequencing (SRP001808)
139
63
-
Arg
TCG
[SRA]
>SRA1029823
SRR035087.187552
454 Sequencing (SRP001808)
310
234
-
Arg
TCG
[SRA]
>SRA1034567
SRR035089.124575
454 Sequencing (SRP001810)
148
72
-
Arg
TCG
[SRA]
>SRA1034574
SRR035089.126691
454 Sequencing (SRP001810)
274
350
+
Arg
TCG
[SRA]
>SRA1035940
SRR035089.409818
454 Sequencing (SRP001810)
142
66
-
Arg
TCG
[SRA]
>SRA1048204
SRR035094.128844
454 Sequencing (SRP001815)
243
319
+
Arg
TCG
[SRA]
>SRA1049069
SRR035095.14204
454 Sequencing (SRP001816)
147
223
+
Arg
TCG
[SRA]
>SRA1049559
SRR035095.95725
454 Sequencing (SRP001816)
119
195
+
Arg
TCG
[SRA]
>SRA1050302
SRR035095.234322
454 Sequencing (SRP001816)
377
453
+
Arg
TCG
[SRA]
Identical group No.272465 (9 seq.)
>WENV170623352
FUWD013147340
[FUWD] metagenome; unknown
840
764
-
Arg
TCG
[ENA]
¢þ
>WENV170626664
FUWD013228152
[FUWD] metagenome; unknown
137
213
+
Arg
TCG
[ENA]
¢þ
>WENV170626684
FUWD013228563
[FUWD] metagenome; unknown
466
390
-
Arg
TCG
[ENA]
¢þ
>WENV170631617
FUWD013358875
[FUWD] metagenome; unknown
840
764
-
Arg
TCG
[ENA]
¢þ
>SRA1018467
SRR035082.295875
454 Sequencing (SRP001803)
466
390
-
Arg
TCG
[SRA]
>SRA1018647
SRR035082.327414
454 Sequencing (SRP001803)
137
213
+
Arg
TCG
[SRA]
>SRA1026702
SRR035085.264160
454 Sequencing (SRP001806)
274
198
-
Arg
TCG
[SRA]
>SRA1026797
SRR035085.292878
454 Sequencing (SRP001806)
274
198
-
Arg
TCG
[SRA]
>SRA1035792
SRR035089.375895
454 Sequencing (SRP001810)
342
266
-
Arg
TCG
[SRA]
Identical group No.272567 (3 seq.)
>WENV170611695
FUWD012376703
[FUWD] metagenome; unknown
112
188
+
Arg
TCG
[ENA]
¢þ
>SRA1019679
SRR035082.500988
454 Sequencing (SRP001803)
398
474
+
Arg
TCG
[SRA]
>SRA1034497
SRR035089.110167
454 Sequencing (SRP001810)
112
188
+
Arg
TCG
[SRA]
Identical group No.300459 (17 seq.)
>WENV170600779
FUWD010142391
[FUWD] metagenome; unknown
173
97
-
Arg
TCG
[ENA]
¢þ
>WENV170625933
FUWD013209829
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>WENV170634147
FUWD013411312
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>SRA1017823
SRR035082.202976
454 Sequencing (SRP001803)
291
367
+
Arg
TCG
[SRA]
>SRA1019017
SRR035082.386933
454 Sequencing (SRP001803)
232
156
-
Arg
TCG
[SRA]
>SRA1019097
SRR035082.400811
454 Sequencing (SRP001803)
37
113
+
Arg
TCG
[SRA]
>SRA1030137
SRR035087.232565
454 Sequencing (SRP001808)
385
309
-
Arg
TCG
[SRA]
>SRA1041851
SRR035091.304846
454 Sequencing (SRP001812)
229
153
-
Arg
TCG
[SRA]
>SRA1047838
SRR035094.51526
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1047856
SRR035094.56510
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048015
SRR035094.89414
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048247
SRR035094.134307
454 Sequencing (SRP001815)
249
173
-
Arg
TCG
[SRA]
>SRA1048418
SRR035094.169337
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048511
SRR035094.190976
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048593
SRR035094.205125
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048727
SRR035094.235954
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048747
SRR035094.239901
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
Identical group No.300786 (4 seq.)
>WENV170612959
FUWD012765671
[FUWD] metagenome; unknown
172
96
-
Arg
TCG
[ENA]
¢þ
>SRA1019275
SRR035082.427384
454 Sequencing (SRP001803)
100
176
+
Arg
TCG
[SRA]
>SRA1032166
SRR035087.567511
454 Sequencing (SRP001808)
115
39
-
Arg
TCG
[SRA]
>SRA1054615
SRR035099.173681
454 Sequencing (SRP001820)
182
106
-
Arg
TCG
[SRA]
Identical group No.314631 (13 seq.)
>W1710821944
LKUC01000154
Thermodesulfobacteriota
Smithella sp. SDB [LKUC]
2118
2194
+
Arg
TCG
[ENA]
¡û
>W1711297444
MAEO01000229
Thermodesulfobacteriota
Smithella sp. M82 [MAEO]
98550
98474
-
Arg
TCG
[ENA]
¡û
>WENV180099034
MTBK01283140
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
6666
6742
+
Arg
TCG
[ENA]
¢þ
>WENV183512893
OMKS01001723
[OMKS] sediment metagenome; hot spring sediment
5895
5819
-
Arg
TCG
[ENA]
¢þ
>WENV183513839
OMKS01008374
[OMKS] sediment metagenome; hot spring sediment
6593
6669
+
Arg
TCG
[ENA]
¢þ
>WENV170715258
LNQE01001041
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
12059
12135
+
Arg
TCG
[ENA]
¢þ
>WENV170726993
LSQX01400804
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
112857
112933
+
Arg
TCG
[ENA]
¢þ
>WENV170971395
MTKX01004829
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
261
337
+
Arg
TCG
[ENA]
¢þ
>WENV170977073
MTKZ01016654
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8389
8465
+
Arg
TCG
[ENA]
¢þ
>W141812374
JQDQ01000047
Thermodesulfobacteriota
Smithella sp. SCADC [JQDQ]
39630
39706
+
Arg
TCG
[ENA]
¡û
>SRA1019769
SRR035082.524935
454 Sequencing (SRP001803)
151
227
+
Arg
TCG
[SRA]
>W1610685906
LKUC01000154
Thermodesulfobacteriota
Smithella sp. SDB [LKUC]
2118
2194
+
Arg
TCG
[ENA]
¡û
>W1611052327
MAEO01000229
Thermodesulfobacteriota
Smithella sp. M82 [MAEO]
98550
98474
-
Arg
TCG
[ENA]
¡û
Identical group No.357947 (2 seq.)
>WENV170607690
FUWD010849438
[FUWD] metagenome; unknown
75
1
-
Arg
TCG
[ENA]
¢þ
>SRA1018110
SRR035082.242059
454 Sequencing (SRP001803)
256
330
+
Arg
TCG
[SRA]
Identical group No.358828 (4 seq.)
>WENV170623412
FUWD013150311
[FUWD] metagenome; unknown
458
382
-
Arg
TCG
[ENA]
¢þ
>WENV170631681
FUWD013361382
[FUWD] metagenome; unknown
458
382
-
Arg
TCG
[ENA]
¢þ
>SRA1019079
SRR035082.398299
454 Sequencing (SRP001803)
456
380
-
Arg
TCG
[SRA]
>SRA1041349
SRR035091.230921
454 Sequencing (SRP001812)
58
134
+
Arg
TCG
[SRA]
Identical group No.372369 (2 seq.)
>SRA1017317
SRR035082.118783
454 Sequencing (SRP001803)
118
192
+
Arg
TCG
[SRA]
>W1610920045
LSSF01000032
Unclassified
Thermoplasmatales archaeon SG8-52-4 [LSSF]
262
187
-
Arg
TCG
[ENA]
¡û
Identical group No.439663 (1 seq.)
>SRA1016956
SRR035082.60597
454 Sequencing (SRP001803)
81
155
+
Arg
TCG
[SRA]
Identical group No.439719 (1 seq.)
>SRA1017658
SRR035082.176150
454 Sequencing (SRP001803)
251
177
-
Arg
TCG
[SRA]
Identical group No.439720 (1 seq.)
>SRA1017669
SRR035082.177505
454 Sequencing (SRP001803)
140
213
+
Arg
TCG
[SRA]
Identical group No.439731 (1 seq.)
>SRA1017765
SRR035082.192986
454 Sequencing (SRP001803)
96
20
-
Arg
TCG
[SRA]
Identical group No.439866 (1 seq.)
>SRA1019182
SRR035082.414164
454 Sequencing (SRP001803)
97
23
-
Arg
TCG
[SRA]
Identical group No.548705 (4 seq.)
>WENV170621374
FUWD013057287
[FUWD] metagenome; unknown
3813
3888
+
Arg
TCG
[ENA]
¢þ
>WENV170629557
FUWD013273628
[FUWD] metagenome; unknown
3813
3888
+
Arg
TCG
[ENA]
¢þ
>SRA1017960
SRR035082.221358
454 Sequencing (SRP001803)
135
60
-
Arg
TCG
[SRA]
>SRA1018116
SRR035082.242875
454 Sequencing (SRP001803)
107
32
-
Arg
TCG
[SRA]
Identical group No.548956 (5 seq.)
>WENV170626732
FUWD013229155
[FUWD] metagenome; unknown
2931
3006
+
Arg
TCG
[ENA]
¢þ
>WENV170629997
FUWD013289331
[FUWD] metagenome; unknown
8235
8310
+
Arg
TCG
[ENA]
¢þ
>SRA1016869
SRR035082.44910
454 Sequencing (SRP001803)
203
128
-
Arg
TCG
[SRA]
>SRA1018016
SRR035082.227440
454 Sequencing (SRP001803)
181
256
+
Arg
TCG
[SRA]
>SRA1038245
SRR035090.271164
454 Sequencing (SRP001811)
76
151
+
Arg
TCG
[SRA]
Identical group No.609222 (2 seq.)
>WENV183668740
ORJL010769410
[ORJL] groundwater metagenome; groundwater
51091
51166
+
Arg
TCG
[ENA]
¢þ
>SRA1017644
SRR035082.174183
454 Sequencing (SRP001803)
159
234
+
Arg
TCG
[SRA]
Identical group No.639991 (1 seq.)
>SRA1017329
SRR035082.119725
454 Sequencing (SRP001803)
128
203
+
Arg
TCG
[SRA]
Identical group No.640112 (1 seq.)
>SRA1018430
SRR035082.290311
454 Sequencing (SRP001803)
79
153
+
Arg
TCG
[SRA]
Identical group No.640155 (1 seq.)
>SRA1018934
SRR035082.372920
454 Sequencing (SRP001803)
104
30
-
Arg
TCG
[SRA]
Identical group No.654406 (4 seq.)
>WENV170611911
FUWD012436366
[FUWD] metagenome; unknown
135
206
+
Arg
TCG
[ENA]
¢þ
>SRA1016959
SRR035082.60852
454 Sequencing (SRP001803)
50
121
+
Arg
TCG
[SRA]
>SRA1026770
SRR035085.285388
454 Sequencing (SRP001806)
145
216
+
Arg
TCG
[SRA]
>SRA1029412
SRR035087.122875
454 Sequencing (SRP001808)
391
462
+
Arg
TCG
[SRA]
Identical group No.654469 (14 seq.)
>WENV170626803
FUWD013229616
[FUWD] metagenome; unknown
3279
3207
-
Arg
TCG
[ENA]
¢þ
>SRA1019337
SRR035082.437284
454 Sequencing (SRP001803)
259
331
+
Arg
TCG
[SRA]
>SRA1034701
SRR035089.155824
454 Sequencing (SRP001810)
520
448
-
Arg
TCG
[SRA]
>SRA1040138
SRR035091.46446
454 Sequencing (SRP001812)
128
200
+
Arg
TCG
[SRA]
>SRA1040597
SRR035091.121076
454 Sequencing (SRP001812)
53
125
+
Arg
TCG
[SRA]
>SRA1040962
SRR035091.175134
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041103
SRR035091.196976
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041682
SRR035091.277877
454 Sequencing (SRP001812)
394
322
-
Arg
TCG
[SRA]
>SRA1041935
SRR035091.316663
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1042092
SRR035091.337114
454 Sequencing (SRP001812)
579
507
-
Arg
TCG
[SRA]
>SRA1042561
SRR035091.409124
454 Sequencing (SRP001812)
144
72
-
Arg
TCG
[SRA]
>SRA1047860
SRR035094.56725
454 Sequencing (SRP001815)
200
128
-
Arg
TCG
[SRA]
>SRA1048113
SRR035094.112105
454 Sequencing (SRP001815)
355
427
+
Arg
TCG
[SRA]
>SRA1048225
SRR035094.130390
454 Sequencing (SRP001815)
199
127
-
Arg
TCG
[SRA]
Identical group No.654661 (4 seq.)
>WENV170607857
FUWD010861866
[FUWD] metagenome; unknown
106
35
-
Arg
TCG
[ENA]
¢þ
>SRA1018591
SRR035082.316876
454 Sequencing (SRP001803)
93
22
-
Arg
TCG
[SRA]
>SRA1026375
SRR035085.195348
454 Sequencing (SRP001806)
116
45
-
Arg
TCG
[SRA]
>SRA1031765
SRR035087.484451
454 Sequencing (SRP001808)
332
261
-
Arg
TCG
[SRA]
Identical group No.771086 (1 seq.)
>SRA1016917
SRR035082.52806
454 Sequencing (SRP001803)
332
260
-
Arg
TCG
[SRA]
Identical group No.771180 (1 seq.)
>SRA1017888
SRR035082.210697
454 Sequencing (SRP001803)
273
344
+
Arg
TCG
[SRA]
Identical group No.771183 (1 seq.)
>SRA1017904
SRR035082.212035
454 Sequencing (SRP001803)
42
116
+
Arg
TCG
[SRA]
Identical group No.771300 (1 seq.)
>SRA1019148
SRR035082.410134
454 Sequencing (SRP001803)
280
208
-
Arg
TCG
[SRA]
Identical group No.771303 (1 seq.)
>SRA1019180
SRR035082.414137
454 Sequencing (SRP001803)
44
118
+
Arg
TCG
[SRA]
Identical group No.771316 (1 seq.)
>SRA1019332
SRR035082.436980
454 Sequencing (SRP001803)
386
459
+
Arg
TCG
[SRA]
Identical group No.771320 (1 seq.)
>SRA1019348
SRR035082.439058
454 Sequencing (SRP001803)
229
158
-
Arg
TCG
[SRA]
Identical group No.833597 (1 seq.)
>SRA1019091
SRR035082.400119
454 Sequencing (SRP001803)
361
287
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK