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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = CAT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16757 (1 seq.)
>SRA1023811
SRR035084.181923
454 Sequencing (SRP001805)
247
339
+
Met
CAT
[SRA]
Identical group No.136913 (1 seq.)
>SRA1024765
SRR035084.396554
454 Sequencing (SRP001805)
325
241
-
Met
CAT
[SRA]
Identical group No.257979 (1 seq.)
>SRA1024016
SRR035084.230848
454 Sequencing (SRP001805)
168
91
-
Met
CAT
[SRA]
Identical group No.257985 (1 seq.)
>SRA1024539
SRR035084.345882
454 Sequencing (SRP001805)
412
338
-
Met
CAT
[SRA]
Identical group No.381072 (1 seq.)
>SRA1023125
SRR035084.9261
454 Sequencing (SRP001805)
458
534
+
Met
CAT
[SRA]
Identical group No.381075 (1 seq.)
>SRA1023157
SRR035084.23078
454 Sequencing (SRP001805)
351
425
+
Met
CAT
[SRA]
Identical group No.381081 (1 seq.)
>SRA1023263
SRR035084.54562
454 Sequencing (SRP001805)
90
163
+
Met
CAT
[SRA]
Identical group No.381083 (1 seq.)
>SRA1023329
SRR035084.72357
454 Sequencing (SRP001805)
45
120
+
Met
CAT
[SRA]
Identical group No.381094 (1 seq.)
>SRA1023707
SRR035084.156358
454 Sequencing (SRP001805)
95
171
+
Met
CAT
[SRA]
Identical group No.381101 (1 seq.)
>SRA1023914
SRR035084.206897
454 Sequencing (SRP001805)
491
415
-
Met
CAT
[SRA]
Identical group No.381104 (1 seq.)
>SRA1024056
SRR035084.238786
454 Sequencing (SRP001805)
269
195
-
Met
CAT
[SRA]
Identical group No.381112 (1 seq.)
>SRA1024267
SRR035084.287068
454 Sequencing (SRP001805)
243
319
+
Met
CAT
[SRA]
Identical group No.381115 (1 seq.)
>SRA1024340
SRR035084.303215
454 Sequencing (SRP001805)
382
306
-
Met
CAT
[SRA]
Identical group No.381120 (1 seq.)
>SRA1024407
SRR035084.317597
454 Sequencing (SRP001805)
415
338
-
Met
CAT
[SRA]
Identical group No.381125 (1 seq.)
>SRA1024668
SRR035084.372513
454 Sequencing (SRP001805)
266
342
+
Met
CAT
[SRA]
Identical group No.381126 (1 seq.)
>SRA1024669
SRR035084.372777
454 Sequencing (SRP001805)
208
133
-
Met
CAT
[SRA]
Identical group No.381140 (1 seq.)
>SRA1024974
SRR035084.451477
454 Sequencing (SRP001805)
212
136
-
Met
CAT
[SRA]
Identical group No.381143 (1 seq.)
>SRA1025053
SRR035084.470392
454 Sequencing (SRP001805)
132
55
-
Met
CAT
[SRA]
Identical group No.381153 (1 seq.)
>SRA1025344
SRR035084.558412
454 Sequencing (SRP001805)
419
343
-
Met
CAT
[SRA]
Identical group No.573357 (1 seq.)
>SRA1023137
SRR035084.15371
454 Sequencing (SRP001805)
403
328
-
Met
CAT
[SRA]
Identical group No.573364 (1 seq.)
>SRA1023241
SRR035084.49010
454 Sequencing (SRP001805)
55
127
+
Met
CAT
[SRA]
Identical group No.573365 (1 seq.)
>SRA1023255
SRR035084.52759
454 Sequencing (SRP001805)
253
178
-
Met
CAT
[SRA]
Identical group No.573375 (1 seq.)
>SRA1023449
SRR035084.101599
454 Sequencing (SRP001805)
362
434
+
Met
CAT
[SRA]
Identical group No.573377 (1 seq.)
>SRA1023508
SRR035084.113731
454 Sequencing (SRP001805)
211
286
+
Met
CAT
[SRA]
Identical group No.573398 (1 seq.)
>SRA1024178
SRR035084.267566
454 Sequencing (SRP001805)
330
258
-
Met
CAT
[SRA]
Identical group No.573414 (1 seq.)
>SRA1024648
SRR035084.368935
454 Sequencing (SRP001805)
422
350
-
Met
CAT
[SRA]
Identical group No.573427 (1 seq.)
>SRA1024842
SRR035084.417630
454 Sequencing (SRP001805)
387
462
+
Met
CAT
[SRA]
Identical group No.726870 (1 seq.)
>SRA1023207
SRR035084.38278
454 Sequencing (SRP001805)
31
103
+
Met
CAT
[SRA]
Identical group No.726879 (1 seq.)
>SRA1023422
SRR035084.95899
454 Sequencing (SRP001805)
91
17
-
Met
CAT
[SRA]
Identical group No.726906 (1 seq.)
>SRA1024228
SRR035084.276772
454 Sequencing (SRP001805)
212
286
+
Met
CAT
[SRA]
Identical group No.727190 (1 seq.)
>SRA1025208
SRR035084.516268
454 Sequencing (SRP001805)
389
315
-
Met
CAT
[SRA]
Identical group No.812656 (1 seq.)
>SRA1024065
SRR035084.240506
454 Sequencing (SRP001805)
188
118
-
Met
CAT
[SRA]
Identical group No.812660 (1 seq.)
>SRA1024329
SRR035084.299629
454 Sequencing (SRP001805)
102
175
+
Met
CAT
[SRA]
Identical group No.812820 (1 seq.)
>SRA1025192
SRR035084.511140
454 Sequencing (SRP001805)
83
13
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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