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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001805)
Anticodon = GTT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257996 (1 seq.)
>SRA1025072
SRR035084.476062
454 Sequencing (SRP001805)
191
115
-
Asn
GTT
[SRA]
Identical group No.381071 (1 seq.)
>SRA1023115
SRR035084.6092
454 Sequencing (SRP001805)
88
161
+
Asn
GTT
[SRA]
Identical group No.381111 (1 seq.)
>SRA1024230
SRR035084.277345
454 Sequencing (SRP001805)
422
346
-
Asn
GTT
[SRA]
Identical group No.381147 (1 seq.)
>SRA1025163
SRR035084.502817
454 Sequencing (SRP001805)
136
212
+
Asn
GTT
[SRA]
Identical group No.573368 (1 seq.)
>SRA1023310
SRR035084.70492
454 Sequencing (SRP001805)
216
144
-
Asn
GTT
[SRA]
Identical group No.573369 (1 seq.)
>SRA1023312
SRR035084.71069
454 Sequencing (SRP001805)
102
27
-
Asn
GTT
[SRA]
Identical group No.573373 (2 seq.)
>SRA1023395
SRR035084.89131
454 Sequencing (SRP001805)
172
246
+
Asn
GTT
[SRA]
>SRA1024190
SRR035084.269081
454 Sequencing (SRP001805)
259
333
+
Asn
GTT
[SRA]
Identical group No.573379 (1 seq.)
>SRA1023553
SRR035084.121459
454 Sequencing (SRP001805)
374
300
-
Asn
GTT
[SRA]
Identical group No.573401 (1 seq.)
>SRA1024269
SRR035084.288267
454 Sequencing (SRP001805)
166
241
+
Asn
GTT
[SRA]
Identical group No.573402 (1 seq.)
>SRA1024281
SRR035084.291626
454 Sequencing (SRP001805)
11
85
+
Asn
GTT
[SRA]
Identical group No.573407 (1 seq.)
>SRA1024488
SRR035084.336032
454 Sequencing (SRP001805)
132
208
+
Asn
GTT
[SRA]
Identical group No.573431 (1 seq.)
>SRA1024904
SRR035084.433284
454 Sequencing (SRP001805)
367
439
+
Asn
GTT
[SRA]
Identical group No.573432 (1 seq.)
>SRA1024940
SRR035084.442908
454 Sequencing (SRP001805)
136
210
+
Asn
GTT
[SRA]
Identical group No.573433 (1 seq.)
>SRA1024971
SRR035084.450735
454 Sequencing (SRP001805)
368
293
-
Asn
GTT
[SRA]
Identical group No.573435 (1 seq.)
>SRA1025066
SRR035084.474745
454 Sequencing (SRP001805)
240
314
+
Asn
GTT
[SRA]
Identical group No.573442 (1 seq.)
>SRA1025124
SRR035084.490878
454 Sequencing (SRP001805)
386
460
+
Asn
GTT
[SRA]
Identical group No.726876 (1 seq.)
>SRA1023396
SRR035084.89525
454 Sequencing (SRP001805)
425
351
-
Asn
GTT
[SRA]
Identical group No.726886 (1 seq.)
>SRA1023538
SRR035084.118451
454 Sequencing (SRP001805)
324
398
+
Asn
GTT
[SRA]
Identical group No.726897 (1 seq.)
>SRA1023829
SRR035084.186080
454 Sequencing (SRP001805)
339
264
-
Asn
GTT
[SRA]
Identical group No.726905 (1 seq.)
>SRA1024225
SRR035084.275570
454 Sequencing (SRP001805)
209
283
+
Asn
GTT
[SRA]
Identical group No.726922 (1 seq.)
>SRA1024988
SRR035084.454356
454 Sequencing (SRP001805)
397
324
-
Asn
GTT
[SRA]
Identical group No.726924 (1 seq.)
>SRA1025063
SRR035084.474707
454 Sequencing (SRP001805)
41
115
+
Asn
GTT
[SRA]
Identical group No.726931 (1 seq.)
>SRA1025222
SRR035084.521108
454 Sequencing (SRP001805)
149
75
-
Asn
GTT
[SRA]
Identical group No.812653 (1 seq.)
>SRA1023684
SRR035084.149783
454 Sequencing (SRP001805)
282
353
+
Asn
GTT
[SRA]
Identical group No.812658 (1 seq.)
>SRA1024203
SRR035084.271769
454 Sequencing (SRP001805)
317
388
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK