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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = AGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654344 (62 seq.)
>WENV180113797
OAPR01025395
[OAPR] marine metagenome; seawater
184
255
+
Pro
AGG
[ENA]
¢þ
>WENV180396308
OBPU01110007
[OBPU] marine metagenome; ENVO:00002010
134
63
-
Pro
AGG
[ENA]
¢þ
>WENV180589807
OCOS01018212
[OCOS] marine metagenome; Sterile flask
251
180
-
Pro
AGG
[ENA]
¢þ
>WENV170599354
FUWD010072338
[FUWD] metagenome; unknown
45
116
+
Pro
AGG
[ENA]
¢þ
>WENV170617004
FUWD012911673
[FUWD] metagenome; unknown
764
693
-
Pro
AGG
[ENA]
¢þ
>WENV170617007
FUWD012911674
[FUWD] metagenome; unknown
474
403
-
Pro
AGG
[ENA]
¢þ
>WENV170617033
FUWD012911683
[FUWD] metagenome; unknown
3140
3069
-
Pro
AGG
[ENA]
¢þ
>WENV170617198
FUWD012917332
[FUWD] metagenome; unknown
530
459
-
Pro
AGG
[ENA]
¢þ
>WENV170617248
FUWD012918846
[FUWD] metagenome; unknown
341
412
+
Pro
AGG
[ENA]
¢þ
>WENV170617249
FUWD012918847
[FUWD] metagenome; unknown
226
297
+
Pro
AGG
[ENA]
¢þ
>WENV170624814
FUWD013187197
[FUWD] metagenome; unknown
249
178
-
Pro
AGG
[ENA]
¢þ
>WENV170633087
FUWD013391135
[FUWD] metagenome; unknown
249
178
-
Pro
AGG
[ENA]
¢þ
>SRA1026314
SRR035085.184871
454 Sequencing (SRP001806)
39
110
+
Pro
AGG
[SRA]
>SRA1026939
SRR035086.31161
454 Sequencing (SRP001807)
421
350
-
Pro
AGG
[SRA]
>SRA1026948
SRR035086.31571
454 Sequencing (SRP001807)
258
187
-
Pro
AGG
[SRA]
>SRA1026984
SRR035086.38395
454 Sequencing (SRP001807)
99
170
+
Pro
AGG
[SRA]
>SRA1026992
SRR035086.39132
454 Sequencing (SRP001807)
322
393
+
Pro
AGG
[SRA]
>SRA1027032
SRR035086.48823
454 Sequencing (SRP001807)
146
217
+
Pro
AGG
[SRA]
>SRA1027034
SRR035086.49211
454 Sequencing (SRP001807)
125
196
+
Pro
AGG
[SRA]
>SRA1027041
SRR035086.50648
454 Sequencing (SRP001807)
271
200
-
Pro
AGG
[SRA]
>SRA1027103
SRR035086.63426
454 Sequencing (SRP001807)
394
323
-
Pro
AGG
[SRA]
>SRA1027154
SRR035086.72631
454 Sequencing (SRP001807)
131
202
+
Pro
AGG
[SRA]
>SRA1027213
SRR035086.82534
454 Sequencing (SRP001807)
32
103
+
Pro
AGG
[SRA]
>SRA1027229
SRR035086.86967
454 Sequencing (SRP001807)
162
233
+
Pro
AGG
[SRA]
>SRA1027240
SRR035086.88607
454 Sequencing (SRP001807)
146
217
+
Pro
AGG
[SRA]
>SRA1027316
SRR035086.105144
454 Sequencing (SRP001807)
501
428
-
Pro
AGG
[SRA]
>SRA1027396
SRR035086.117230
454 Sequencing (SRP001807)
503
430
-
Pro
AGG
[SRA]
>SRA1027401
SRR035086.117431
454 Sequencing (SRP001807)
53
124
+
Pro
AGG
[SRA]
>SRA1027436
SRR035086.125305
454 Sequencing (SRP001807)
291
220
-
Pro
AGG
[SRA]
>SRA1027504
SRR035086.137318
454 Sequencing (SRP001807)
458
387
-
Pro
AGG
[SRA]
>SRA1027514
SRR035086.139368
454 Sequencing (SRP001807)
346
417
+
Pro
AGG
[SRA]
>SRA1027555
SRR035086.146522
454 Sequencing (SRP001807)
299
228
-
Pro
AGG
[SRA]
>SRA1027637
SRR035086.165564
454 Sequencing (SRP001807)
259
188
-
Pro
AGG
[SRA]
>SRA1027728
SRR035086.182833
454 Sequencing (SRP001807)
138
209
+
Pro
AGG
[SRA]
>SRA1027747
SRR035086.185678
454 Sequencing (SRP001807)
115
44
-
Pro
AGG
[SRA]
>SRA1027770
SRR035086.190322
454 Sequencing (SRP001807)
437
366
-
Pro
AGG
[SRA]
>SRA1027857
SRR035086.207589
454 Sequencing (SRP001807)
187
258
+
Pro
AGG
[SRA]
>SRA1027892
SRR035086.213400
454 Sequencing (SRP001807)
484
413
-
Pro
AGG
[SRA]
>SRA1027930
SRR035086.221136
454 Sequencing (SRP001807)
180
109
-
Pro
AGG
[SRA]
>SRA1027963
SRR035086.228102
454 Sequencing (SRP001807)
541
470
-
Pro
AGG
[SRA]
>SRA1027992
SRR035086.233512
454 Sequencing (SRP001807)
95
166
+
Pro
AGG
[SRA]
>SRA1028173
SRR035086.270344
454 Sequencing (SRP001807)
26
97
+
Pro
AGG
[SRA]
>SRA1028233
SRR035086.280077
454 Sequencing (SRP001807)
405
334
-
Pro
AGG
[SRA]
>SRA1028255
SRR035086.286130
454 Sequencing (SRP001807)
378
449
+
Pro
AGG
[SRA]
>SRA1028300
SRR035086.295035
454 Sequencing (SRP001807)
368
297
-
Pro
AGG
[SRA]
>SRA1028306
SRR035086.296475
454 Sequencing (SRP001807)
244
173
-
Pro
AGG
[SRA]
>SRA1028428
SRR035086.323968
454 Sequencing (SRP001807)
180
109
-
Pro
AGG
[SRA]
>SRA1028497
SRR035086.340712
454 Sequencing (SRP001807)
325
254
-
Pro
AGG
[SRA]
>SRA1028694
SRR035086.398734
454 Sequencing (SRP001807)
153
82
-
Pro
AGG
[SRA]
>SRA1028732
SRR035086.412548
454 Sequencing (SRP001807)
110
181
+
Pro
AGG
[SRA]
>SRA1050723
SRR035096.5310
454 Sequencing (SRP001817)
57
128
+
Pro
AGG
[SRA]
>SRA1050829
SRR035096.28131
454 Sequencing (SRP001817)
158
229
+
Pro
AGG
[SRA]
>SRA1050873
SRR035096.40287
454 Sequencing (SRP001817)
497
426
-
Pro
AGG
[SRA]
>SRA1050934
SRR035096.54630
454 Sequencing (SRP001817)
337
408
+
Pro
AGG
[SRA]
>SRA1051021
SRR035096.70099
454 Sequencing (SRP001817)
338
409
+
Pro
AGG
[SRA]
>SRA1051098
SRR035096.85591
454 Sequencing (SRP001817)
74
145
+
Pro
AGG
[SRA]
>SRA1051114
SRR035096.88967
454 Sequencing (SRP001817)
73
144
+
Pro
AGG
[SRA]
>SRA1051235
SRR035096.115695
454 Sequencing (SRP001817)
83
154
+
Pro
AGG
[SRA]
>SRA1051270
SRR035096.126962
454 Sequencing (SRP001817)
119
190
+
Pro
AGG
[SRA]
>SRA1051302
SRR035096.134212
454 Sequencing (SRP001817)
98
169
+
Pro
AGG
[SRA]
>SRA1051407
SRR035096.168768
454 Sequencing (SRP001817)
119
190
+
Pro
AGG
[SRA]
>WENV036935
AACY021819771
Marine microbial communities from Global Ocean Sampling (GOS)
885
811
-
Pro
AGG
[ENA]
Identical group No.739336 (1 seq.)
>SRA1027114
SRR035086.64441
454 Sequencing (SRP001807)
79
8
-
Pro
AGG
[SRA]
Identical group No.739351 (1 seq.)
>SRA1027727
SRR035086.181974
454 Sequencing (SRP001807)
352
425
+
Pro
AGG
[SRA]
Identical group No.818459 (1 seq.)
>SRA1027300
SRR035086.101662
454 Sequencing (SRP001807)
289
359
+
Pro
AGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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