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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CGC
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300283 (1 seq.)
>SRA1028870
SRR035087.27027
454 Sequencing (SRP001808)
108
32
-
Ala
CGC
[SRA]
Identical group No.300625 (1 seq.)
>SRA1031133
SRR035087.379059
454 Sequencing (SRP001808)
419
494
+
Ala
CGC
[SRA]
Identical group No.300677 (1 seq.)
>SRA1031408
SRR035087.425047
454 Sequencing (SRP001808)
363
437
+
Ala
CGC
[SRA]
Identical group No.484191 (1 seq.)
>SRA1029726
SRR035087.171146
454 Sequencing (SRP001808)
444
369
-
Ala
CGC
[SRA]
Identical group No.484200 (2 seq.)
>SRA1029793
SRR035087.182191
454 Sequencing (SRP001808)
173
101
-
Ala
CGC
[SRA]
>SRA1031020
SRR035087.360900
454 Sequencing (SRP001808)
172
100
-
Ala
CGC
[SRA]
Identical group No.484216 (1 seq.)
>SRA1029885
SRR035087.196506
454 Sequencing (SRP001808)
285
360
+
Ala
CGC
[SRA]
Identical group No.484235 (1 seq.)
>SRA1029986
SRR035087.211968
454 Sequencing (SRP001808)
333
260
-
Ala
CGC
[SRA]
Identical group No.484253 (1 seq.)
>SRA1030116
SRR035087.229905
454 Sequencing (SRP001808)
391
319
-
Ala
CGC
[SRA]
Identical group No.484361 (1 seq.)
>SRA1030836
SRR035087.336679
454 Sequencing (SRP001808)
248
323
+
Ala
CGC
[SRA]
Identical group No.484368 (1 seq.)
>SRA1030876
SRR035087.342017
454 Sequencing (SRP001808)
98
173
+
Ala
CGC
[SRA]
Identical group No.484553 (1 seq.)
>SRA1032228
SRR035087.581792
454 Sequencing (SRP001808)
245
172
-
Ala
CGC
[SRA]
Identical group No.672609 (1 seq.)
>SRA1031897
SRR035087.508334
454 Sequencing (SRP001808)
336
262
-
Ala
CGC
[SRA]
Identical group No.788021 (1 seq.)
>SRA1029103
SRR035087.73882
454 Sequencing (SRP001808)
447
374
-
Ala
CGC
[SRA]
Identical group No.788158 (1 seq.)
>SRA1031161
SRR035087.382231
454 Sequencing (SRP001808)
340
413
+
Ala
CGC
[SRA]
Identical group No.788241 (1 seq.)
>SRA1032403
SRR035087.622694
454 Sequencing (SRP001808)
244
171
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK