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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GAT
HIT:
52 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157528 (1 seq.)
>SRA1031667
SRR035087.467756
454 Sequencing (SRP001808)
159
241
+
Ile
GAT
[SRA]
Identical group No.219646 (1 seq.)
>SRA1032213
SRR035087.577530
454 Sequencing (SRP001808)
357
274
-
Ile
GAT
[SRA]
Identical group No.235649 (1 seq.)
>SRA1029817
SRR035087.187258
454 Sequencing (SRP001808)
197
273
+
Ile
GAT
[SRA]
Identical group No.244427 (2 seq.)
>SRA1028905
SRR035087.34839
454 Sequencing (SRP001808)
345
268
-
Ile
GAT
[SRA]
>SRA1030004
SRR035087.215183
454 Sequencing (SRP001808)
344
267
-
Ile
GAT
[SRA]
Identical group No.244434 (1 seq.)
>SRA1029029
SRR035087.61161
454 Sequencing (SRP001808)
111
187
+
Ile
GAT
[SRA]
Identical group No.244452 (3 seq.)
>SRA1029413
SRR035087.124005
454 Sequencing (SRP001808)
182
105
-
Ile
GAT
[SRA]
>SRA1030184
SRR035087.239367
454 Sequencing (SRP001808)
182
105
-
Ile
GAT
[SRA]
>SRA1031391
SRR035087.423147
454 Sequencing (SRP001808)
181
104
-
Ile
GAT
[SRA]
Identical group No.244464 (1 seq.)
>SRA1029633
SRR035087.154175
454 Sequencing (SRP001808)
148
223
+
Ile
GAT
[SRA]
Identical group No.244485 (1 seq.)
>SRA1030348
SRR035087.265837
454 Sequencing (SRP001808)
164
90
-
Ile
GAT
[SRA]
Identical group No.244497 (1 seq.)
>SRA1030701
SRR035087.316337
454 Sequencing (SRP001808)
272
349
+
Ile
GAT
[SRA]
Identical group No.244503 (1 seq.)
>SRA1030757
SRR035087.327408
454 Sequencing (SRP001808)
101
24
-
Ile
GAT
[SRA]
Identical group No.244510 (1 seq.)
>SRA1030864
SRR035087.341521
454 Sequencing (SRP001808)
103
28
-
Ile
GAT
[SRA]
Identical group No.300287 (1 seq.)
>SRA1028892
SRR035087.32381
454 Sequencing (SRP001808)
78
154
+
Ile
GAT
[SRA]
Identical group No.300290 (1 seq.)
>SRA1028908
SRR035087.35901
454 Sequencing (SRP001808)
73
149
+
Ile
GAT
[SRA]
Identical group No.300313 (1 seq.)
>SRA1029118
SRR035087.77001
454 Sequencing (SRP001808)
86
10
-
Ile
GAT
[SRA]
Identical group No.300331 (1 seq.)
>SRA1029283
SRR035087.103492
454 Sequencing (SRP001808)
262
189
-
Ile
GAT
[SRA]
Identical group No.300353 (1 seq.)
>SRA1029484
SRR035087.135046
454 Sequencing (SRP001808)
261
337
+
Ile
GAT
[SRA]
Identical group No.300419 (1 seq.)
>SRA1029869
SRR035087.194769
454 Sequencing (SRP001808)
271
346
+
Ile
GAT
[SRA]
Identical group No.300432 (1 seq.)
>SRA1029952
SRR035087.207861
454 Sequencing (SRP001808)
402
326
-
Ile
GAT
[SRA]
Identical group No.300440 (1 seq.)
>SRA1030015
SRR035087.216505
454 Sequencing (SRP001808)
111
35
-
Ile
GAT
[SRA]
Identical group No.300471 (1 seq.)
>SRA1030215
SRR035087.243838
454 Sequencing (SRP001808)
86
13
-
Ile
GAT
[SRA]
Identical group No.300473 (1 seq.)
>SRA1030221
SRR035087.244518
454 Sequencing (SRP001808)
3
77
+
Ile
GAT
[SRA]
Identical group No.300482 (1 seq.)
>SRA1030273
SRR035087.254688
454 Sequencing (SRP001808)
97
24
-
Ile
GAT
[SRA]
Identical group No.300490 (1 seq.)
>SRA1030303
SRR035087.259274
454 Sequencing (SRP001808)
370
294
-
Ile
GAT
[SRA]
Identical group No.300540 (1 seq.)
>SRA1030569
SRR035087.297280
454 Sequencing (SRP001808)
181
257
+
Ile
GAT
[SRA]
Identical group No.300542 (1 seq.)
>SRA1030575
SRR035087.298927
454 Sequencing (SRP001808)
127
53
-
Ile
GAT
[SRA]
Identical group No.300546 (1 seq.)
>SRA1030587
SRR035087.300898
454 Sequencing (SRP001808)
103
179
+
Ile
GAT
[SRA]
Identical group No.300561 (1 seq.)
>SRA1030729
SRR035087.321659
454 Sequencing (SRP001808)
438
362
-
Ile
GAT
[SRA]
Identical group No.300600 (1 seq.)
>SRA1030970
SRR035087.356572
454 Sequencing (SRP001808)
20
96
+
Ile
GAT
[SRA]
Identical group No.300637 (1 seq.)
>SRA1031196
SRR035087.389660
454 Sequencing (SRP001808)
359
283
-
Ile
GAT
[SRA]
Identical group No.300658 (1 seq.)
>SRA1031325
SRR035087.412981
454 Sequencing (SRP001808)
103
179
+
Ile
GAT
[SRA]
Identical group No.300672 (1 seq.)
>SRA1031384
SRR035087.421999
454 Sequencing (SRP001808)
414
338
-
Ile
GAT
[SRA]
Identical group No.300680 (1 seq.)
>SRA1031449
SRR035087.432112
454 Sequencing (SRP001808)
73
-1
-
Ile
GAT
[SRA]
Identical group No.300698 (1 seq.)
>SRA1031551
SRR035087.448678
454 Sequencing (SRP001808)
123
47
-
Ile
GAT
[SRA]
Identical group No.300728 (1 seq.)
>SRA1031720
SRR035087.477150
454 Sequencing (SRP001808)
503
427
-
Ile
GAT
[SRA]
Identical group No.300745 (1 seq.)
>SRA1031890
SRR035087.506425
454 Sequencing (SRP001808)
81
155
+
Ile
GAT
[SRA]
Identical group No.300800 (1 seq.)
>SRA1032238
SRR035087.584317
454 Sequencing (SRP001808)
81
5
-
Ile
GAT
[SRA]
Identical group No.301004 (1 seq.)
>SRA1031189
SRR035087.388539
454 Sequencing (SRP001808)
222
146
-
Ile
GAT
[SRA]
Identical group No.484054 (1 seq.)
>SRA1028884
SRR035087.30507
454 Sequencing (SRP001808)
94
22
-
Ile
GAT
[SRA]
Identical group No.484068 (1 seq.)
>SRA1028951
SRR035087.44711
454 Sequencing (SRP001808)
349
423
+
Ile
GAT
[SRA]
Identical group No.484345 (1 seq.)
>SRA1030758
SRR035087.327598
454 Sequencing (SRP001808)
357
282
-
Ile
GAT
[SRA]
Identical group No.672391 (1 seq.)
>SRA1030013
SRR035087.216048
454 Sequencing (SRP001808)
100
29
-
Ile
GAT
[SRA]
Identical group No.672409 (1 seq.)
>SRA1030145
SRR035087.233333
454 Sequencing (SRP001808)
432
361
-
Ile
GAT
[SRA]
Identical group No.672518 (1 seq.)
>SRA1031077
SRR035087.368797
454 Sequencing (SRP001808)
190
264
+
Ile
GAT
[SRA]
Identical group No.672544 (1 seq.)
>SRA1031264
SRR035087.402307
454 Sequencing (SRP001808)
45
118
+
Ile
GAT
[SRA]
Identical group No.672635 (1 seq.)
>SRA1032151
SRR035087.564457
454 Sequencing (SRP001808)
88
14
-
Ile
GAT
[SRA]
Identical group No.788019 (1 seq.)
>SRA1029092
SRR035087.71557
454 Sequencing (SRP001808)
247
174
-
Ile
GAT
[SRA]
Identical group No.788060 (1 seq.)
>SRA1029648
SRR035087.156127
454 Sequencing (SRP001808)
44
117
+
Ile
GAT
[SRA]
Identical group No.788077 (1 seq.)
>SRA1029838
SRR035087.190446
454 Sequencing (SRP001808)
384
457
+
Ile
GAT
[SRA]
Identical group No.788078 (1 seq.)
>SRA1029846
SRR035087.190912
454 Sequencing (SRP001808)
230
303
+
Ile
GAT
[SRA]
Identical group No.788165 (1 seq.)
>SRA1031244
SRR035087.398014
454 Sequencing (SRP001808)
76
3
-
Ile
GAT
[SRA]
Identical group No.788203 (1 seq.)
>SRA1031880
SRR035087.503311
454 Sequencing (SRP001808)
128
201
+
Ile
GAT
[SRA]
Identical group No.788331 (1 seq.)
>SRA1030453
SRR035087.281054
454 Sequencing (SRP001808)
142
71
-
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK