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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TGA
HIT:
50 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13443 (1 seq.)
>SRA1032292
SRR035087.596876
454 Sequencing (SRP001808)
107
15
-
Ser
TGA
[SRA]
Identical group No.21414 (1 seq.)
>SRA1029207
SRR035087.92014
454 Sequencing (SRP001808)
435
344
-
Ser
TGA
[SRA]
Identical group No.21422 (1 seq.)
>SRA1030872
SRR035087.341810
454 Sequencing (SRP001808)
309
401
+
Ser
TGA
[SRA]
Identical group No.21425 (1 seq.)
>SRA1031272
SRR035087.404304
454 Sequencing (SRP001808)
270
361
+
Ser
TGA
[SRA]
Identical group No.21433 (1 seq.)
>SRA1032018
SRR035087.533880
454 Sequencing (SRP001808)
73
164
+
Ser
TGA
[SRA]
Identical group No.21436 (1 seq.)
>SRA1032185
SRR035087.571247
454 Sequencing (SRP001808)
162
71
-
Ser
TGA
[SRA]
Identical group No.21439 (1 seq.)
>SRA1032415
SRR035087.625795
454 Sequencing (SRP001808)
3
94
+
Ser
TGA
[SRA]
Identical group No.32926 (1 seq.)
>SRA1029311
SRR035087.107647
454 Sequencing (SRP001808)
111
21
-
Ser
TGA
[SRA]
Identical group No.32929 (1 seq.)
>SRA1029825
SRR035087.187912
454 Sequencing (SRP001808)
235
324
+
Ser
TGA
[SRA]
Identical group No.32930 (1 seq.)
>SRA1029871
SRR035087.195214
454 Sequencing (SRP001808)
361
271
-
Ser
TGA
[SRA]
Identical group No.49583 (1 seq.)
>SRA1028786
SRR035087.6726
454 Sequencing (SRP001808)
214
125
-
Ser
TGA
[SRA]
Identical group No.49584 (1 seq.)
>SRA1028953
SRR035087.44803
454 Sequencing (SRP001808)
364
275
-
Ser
TGA
[SRA]
Identical group No.49588 (1 seq.)
>SRA1029341
SRR035087.111561
454 Sequencing (SRP001808)
104
193
+
Ser
TGA
[SRA]
Identical group No.49590 (1 seq.)
>SRA1029425
SRR035087.125422
454 Sequencing (SRP001808)
332
243
-
Ser
TGA
[SRA]
Identical group No.49605 (1 seq.)
>SRA1030832
SRR035087.336298
454 Sequencing (SRP001808)
193
282
+
Ser
TGA
[SRA]
Identical group No.49612 (1 seq.)
>SRA1031338
SRR035087.414820
454 Sequencing (SRP001808)
150
63
-
Ser
TGA
[SRA]
Identical group No.49613 (1 seq.)
>SRA1031466
SRR035087.433848
454 Sequencing (SRP001808)
50
137
+
Ser
TGA
[SRA]
Identical group No.49617 (1 seq.)
>SRA1031758
SRR035087.482720
454 Sequencing (SRP001808)
137
48
-
Ser
TGA
[SRA]
Identical group No.49620 (1 seq.)
>SRA1031877
SRR035087.502972
454 Sequencing (SRP001808)
208
295
+
Ser
TGA
[SRA]
Identical group No.49647 (1 seq.)
>SRA1031278
SRR035087.405965
454 Sequencing (SRP001808)
333
246
-
Ser
TGA
[SRA]
Identical group No.74731 (1 seq.)
>SRA1029795
SRR035087.182401
454 Sequencing (SRP001808)
203
291
+
Ser
TGA
[SRA]
Identical group No.74753 (1 seq.)
>SRA1031984
SRR035087.525653
454 Sequencing (SRP001808)
235
150
-
Ser
TGA
[SRA]
Identical group No.90532 (1 seq.)
>SRA1029016
SRR035087.58845
454 Sequencing (SRP001808)
98
185
+
Ser
TGA
[SRA]
Identical group No.90547 (1 seq.)
>SRA1029679
SRR035087.162601
454 Sequencing (SRP001808)
348
263
-
Ser
TGA
[SRA]
Identical group No.90555 (1 seq.)
>SRA1029888
SRR035087.197253
454 Sequencing (SRP001808)
111
198
+
Ser
TGA
[SRA]
Identical group No.90560 (1 seq.)
>SRA1030133
SRR035087.231996
454 Sequencing (SRP001808)
87
174
+
Ser
TGA
[SRA]
Identical group No.90561 (1 seq.)
>SRA1030257
SRR035087.250782
454 Sequencing (SRP001808)
108
23
-
Ser
TGA
[SRA]
Identical group No.90562 (1 seq.)
>SRA1030394
SRR035087.273809
454 Sequencing (SRP001808)
166
79
-
Ser
TGA
[SRA]
Identical group No.90565 (1 seq.)
>SRA1030463
SRR035087.282017
454 Sequencing (SRP001808)
275
361
+
Ser
TGA
[SRA]
Identical group No.90568 (1 seq.)
>SRA1030586
SRR035087.300774
454 Sequencing (SRP001808)
141
54
-
Ser
TGA
[SRA]
Identical group No.90578 (1 seq.)
>SRA1030893
SRR035087.343741
454 Sequencing (SRP001808)
159
246
+
Ser
TGA
[SRA]
Identical group No.90583 (1 seq.)
>SRA1031260
SRR035087.401815
454 Sequencing (SRP001808)
162
249
+
Ser
TGA
[SRA]
Identical group No.90591 (1 seq.)
>SRA1031704
SRR035087.474267
454 Sequencing (SRP001808)
356
443
+
Ser
TGA
[SRA]
Identical group No.90593 (1 seq.)
>SRA1031763
SRR035087.483987
454 Sequencing (SRP001808)
91
4
-
Ser
TGA
[SRA]
Identical group No.90607 (1 seq.)
>SRA1032323
SRR035087.605080
454 Sequencing (SRP001808)
216
129
-
Ser
TGA
[SRA]
Identical group No.118291 (1 seq.)
>SRA1029035
SRR035087.62463
454 Sequencing (SRP001808)
113
26
-
Ser
TGA
[SRA]
Identical group No.118311 (1 seq.)
>SRA1029788
SRR035087.181194
454 Sequencing (SRP001808)
103
17
-
Ser
TGA
[SRA]
Identical group No.118313 (1 seq.)
>SRA1029858
SRR035087.192905
454 Sequencing (SRP001808)
472
386
-
Ser
TGA
[SRA]
Identical group No.118325 (1 seq.)
>SRA1030075
SRR035087.224421
454 Sequencing (SRP001808)
337
251
-
Ser
TGA
[SRA]
Identical group No.118345 (1 seq.)
>SRA1031004
SRR035087.359115
454 Sequencing (SRP001808)
141
56
-
Ser
TGA
[SRA]
Identical group No.118351 (1 seq.)
>SRA1031157
SRR035087.381759
454 Sequencing (SRP001808)
219
303
+
Ser
TGA
[SRA]
Identical group No.118352 (1 seq.)
>SRA1031162
SRR035087.382682
454 Sequencing (SRP001808)
3
89
+
Ser
TGA
[SRA]
Identical group No.118364 (1 seq.)
>SRA1031539
SRR035087.446556
454 Sequencing (SRP001808)
416
331
-
Ser
TGA
[SRA]
Identical group No.118382 (1 seq.)
>SRA1032014
SRR035087.532018
454 Sequencing (SRP001808)
247
161
-
Ser
TGA
[SRA]
Identical group No.157491 (1 seq.)
>SRA1029619
SRR035087.152120
454 Sequencing (SRP001808)
93
178
+
Ser
TGA
[SRA]
Identical group No.157500 (1 seq.)
>SRA1030363
SRR035087.268202
454 Sequencing (SRP001808)
268
353
+
Ser
TGA
[SRA]
Identical group No.219662 (1 seq.)
>SRA1030154
SRR035087.234704
454 Sequencing (SRP001808)
12
94
+
Ser
TGA
[SRA]
Identical group No.219664 (1 seq.)
>SRA1032163
SRR035087.566320
454 Sequencing (SRP001808)
399
317
-
Ser
TGA
[SRA]
Identical group No.229252 (1 seq.)
>SRA1029528
SRR035087.141963
454 Sequencing (SRP001808)
57
138
+
Ser
TGA
[SRA]
Identical group No.788103 (1 seq.)
>SRA1030239
SRR035087.247625
454 Sequencing (SRP001808)
187
112
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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