This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001809)
Anticodon = TCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.825 (6 seq.)
>WENV170601722
FUWD010190226
[FUWD] metagenome; unknown
449
546
+
SeC
TCA
[ENA]
¢þ
>SRA1033299
SRR035088.219529
454 Sequencing (SRP001809)
437
534
+
SeC
TCA
[SRA]
>SRA1053940
SRR035099.9988
454 Sequencing (SRP001820)
198
101
-
SeC
TCA
[SRA]
>SRA1054154
SRR035099.70300
454 Sequencing (SRP001820)
161
64
-
SeC
TCA
[SRA]
>SRA1054234
SRR035099.90024
454 Sequencing (SRP001820)
161
64
-
SeC
TCA
[SRA]
>SRA1054378
SRR035099.118832
454 Sequencing (SRP001820)
379
282
-
SeC
TCA
[SRA]
Identical group No.940 (6 seq.)
>WENV170693652
LGVC01035926
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
408
505
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170695526
LGVE01113699
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1369
1272
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170697321
LGVF01112680
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2280
2183
-
SeC(p)
TCA
[ENA]
¢þ
>SRA1033447
SRR035088.259726
454 Sequencing (SRP001809)
200
297
+
SeC
TCA
[SRA]
>SRA1033682
SRR035088.322288
454 Sequencing (SRP001809)
101
4
-
SeC
TCA
[SRA]
>SRA1049554
SRR035095.95245
454 Sequencing (SRP001816)
420
323
-
SeC
TCA
[SRA]
Identical group No.1459 (1 seq.)
>SRA1032455
SRR035088.14724
454 Sequencing (SRP001809)
321
418
+
SeC
TCA
[SRA]
Identical group No.1460 (1 seq.)
>SRA1032522
SRR035088.37496
454 Sequencing (SRP001809)
94
-1
-
SeC
TCA
[SRA]
Identical group No.1461 (1 seq.)
>SRA1033871
SRR035088.386039
454 Sequencing (SRP001809)
290
195
-
SeC
TCA
[SRA]
Identical group No.1462 (1 seq.)
>SRA1034067
SRR035088.473148
454 Sequencing (SRP001809)
133
228
+
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK