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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113408 (11 seq.)
>W1711220200
LXQG01000066
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
22116
22202
+
Leu
CAA
[ENA]
¡û
>W1711292958
LZYE01000065
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
3377
3463
+
Leu
CAA
[ENA]
¡û
>W1711293022
LZYF01000273
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
1114
1200
+
Leu
CAA
[ENA]
¡û
>W1711293069
LZYG01000264
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
3377
3463
+
Leu
CAA
[ENA]
¡û
>W1711293083
LZYH01000295
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
12542
12456
-
Leu
CAA
[ENA]
¡û
>WENV181406350
OGCG01000142
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1314
1228
-
Leu
CAA
[ENA]
¢þ
>C181130800
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
603741
603827
+
Leu
CAA
-
¡û
>W09134910
ACVD01000070
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
56376
56462
+
Leu
CAA
[ENA]
¡û
>C151007941
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
710485
710571
+
Leu
CAA
[Ensembl]
¡û
>C11100484
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
682214
682300
+
Leu
CAA
[Ensembl]
¡û
>W1611004672
LXQG01000066
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
22116
22202
+
Leu
CAA
[ENA]
¡û
Identical group No.114261 (27 seq.)
>W1710777647
LJBT01000023
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
37256
37342
+
Leu
CAA
[ENA]
¡û
>W1711010487
LQRJ01000062
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
20395
20309
-
Leu
CAA
[ENA]
¡û
>W1711168369
LVXZ01000255
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
115
201
+
Leu
CAA
[ENA]
¡û
>W1711169859
LVZL01000006
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
36549
36635
+
Leu
CAA
[ENA]
¡û
>W1711585826
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2089417
2089331
-
Leu
CAA
[ENA]
¡û
>W141262940
CCCS020000049
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
64661
64747
+
Leu
CAA
[ENA]
¡û
>C08000428
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1949205
1949122
-
Leu
CAA
[Ensembl]
¡û
>WENV170008360
AOMP01000306
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
581
495
-
Leu
CAA
[ENA]
¢þ
>WENV170008516
AOMQ01001390
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
817
903
+
Leu
CAA
[ENA]
¢þ
>WENV170008517
AOMQ01001408
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
934
848
-
Leu
CAA
[ENA]
¢þ
>C191005142
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
397043
396957
-
Leu
CAA
-
¡û
>W141695585
JMEB01000135
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
1659
1745
+
Leu
CAA
[ENA]
¡û
>W141738860
JNNH01002003
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
190
104
-
Leu
CAA
[ENA]
¡û
>C09100381
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2063673
2063587
-
Leu
CAA
[Ensembl]
¡û
>W1910831829
MXAV01000012
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
6509
6595
+
Leu
CAA
[ENA]
¡û
>W1810257127
PQJK01000003
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
224347
224433
+
Leu
CAA
[ENA]
¡û
>W1810679300
QKQP01000011
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
49475
49561
+
Leu
CAA
[ENA]
¡û
>W10128001
AEFB01001295
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
864
950
+
Leu
CAA
[ENA]
¡û
>C11100720
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1082590
1082676
+
Leu
CAA
[Ensembl]
¡û
>W11135546
AEFB01001295
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
864
950
+
Leu
CAA
[ENA]
¡û
>W11164284
AFJD01000011
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
86955
86869
-
Leu
CAA
[ENA]
¡û
>W1610627908
LIEB01000029
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
37230
37316
+
Leu
CAA
[ENA]
¡û
>W1610641833
LJBT01000023
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
37256
37342
+
Leu
CAA
[ENA]
¡û
>W1610859007
LQRJ01000062
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
20395
20309
-
Leu
CAA
[ENA]
¡û
>W1610978284
LVXZ01000255
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
115
201
+
Leu
CAA
[ENA]
¡û
>W1710743697
LGYM01000031
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
76267
76181
-
Leu
CAA
[ENA]
¡û
>W1710759035
LIEB01000029
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
37230
37316
+
Leu
CAA
[ENA]
¡û
Identical group No.139330 (4 seq.)
>W1710798665
LJTU01000030
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
37216
37302
+
Leu
CAA
[ENA]
¡û
>W1710798749
LJTW01000265
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
7
93
+
Leu
CAA
[ENA]
¡û
>W1610662622
LJTU01000030
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
37216
37302
+
Leu
CAA
[ENA]
¡û
>W1610662706
LJTW01000265
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
7
93
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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