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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CAC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278037 (1 seq.)
>W1711169888
LVZL01000076
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
37740
37815
+
Val
CAC
[ENA]
¡û
Identical group No.439433 (4 seq.)
>W1710799183
LJUK01000095
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
4197
4271
+
Val
CAC
[ENA]
¡û
>W1710799749
LJVB01000007
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
4998
5072
+
Val
CAC
[ENA]
¡û
>W1610663140
LJUK01000095
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
4197
4271
+
Val
CAC
[ENA]
¡û
>W1610663706
LJVB01000007
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
4998
5072
+
Val
CAC
[ENA]
¡û
Identical group No.466884 (2 seq.)
>W141738854
JNNH01001232
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
157
231
+
Val
CAC
[ENA]
¡û
>W11168529
AFOH01000040
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
24140
24214
+
Val
CAC
[ENA]
¡û
Identical group No.469740 (1 seq.)
>W131231789
AUIS01000030
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
25462
25536
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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