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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458056 (3 seq.)
>W1711292985
LZYE01000362
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
332
257
-
Thr
CGT
[ENA]
¡û
>W1711293031
LZYF01000393
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
348
273
-
Thr
CGT
[ENA]
¡û
>W1711293073
LZYG01000364
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
332
257
-
Thr
CGT
[ENA]
¡û
Identical group No.462553 (1 seq.)
>C09300006
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1030620
1030545
-
Thr
CGT
[Ensembl]
¡û
Identical group No.490918 (1 seq.)
>W141262922
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
242204
242129
-
Thr
CGT
[ENA]
¡û
Identical group No.508091 (9 seq.)
>W143004119
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7072
6997
-
Thr
CGT
[ENA]
¡û
>W1730013212
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23334
23409
+
Thr
CGT
[ENA]
¡û
>W1730023173
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
5802
5727
-
Thr
CGT
[ENA]
¡û
>W1730023174
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20795
20870
+
Thr
CGT
[ENA]
¡û
>W1730023188
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7143
7068
-
Thr
CGT
[ENA]
¡û
>W1730023202
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7175
7100
-
Thr
CGT
[ENA]
¡û
>W1730023208
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13312
13237
-
Thr
CGT
[ENA]
¡û
>W1730023212
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16610
16685
+
Thr
CGT
[ENA]
¡û
>W1730025108
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7161
7086
-
Thr
CGT
[ENA]
¡û
Identical group No.510587 (6 seq.)
>W1711190341
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
4961
5036
+
Thr
CGT
[ENA]
¡û
>W1711190461
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8213
8138
-
Thr
CGT
[ENA]
¡û
>W1711190524
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8434
8509
+
Thr
CGT
[ENA]
¡û
>W1711190734
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
5982
6057
+
Thr
CGT
[ENA]
¡û
>W1711293143
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8231
8156
-
Thr
CGT
[ENA]
¡û
>W141206749
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
137723
137798
+
Thr
CGT
[ENA]
¡û
Identical group No.510590 (12 seq.)
>W1711190265
LWRY01000135
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
13627
13552
-
Thr
CGT
[ENA]
¡û
>W1711190383
LWRZ01000283
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
5475
5550
+
Thr
CGT
[ENA]
¡û
>W1711190441
LWSA01000160
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
35217
35292
+
Thr
CGT
[ENA]
¡û
>W1711190564
LWSB01000236
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
56043
56118
+
Thr
CGT
[ENA]
¡û
>W1711190639
LWSC01000286
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
2561
2486
-
Thr
CGT
[ENA]
¡û
>W1711190696
LWSD01000164
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
28871
28946
+
Thr
CGT
[ENA]
¡û
>W1711293154
LZYI01000021
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
24168
24093
-
Thr
CGT
[ENA]
¡û
>W1711585813
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1789733
1789808
+
Thr
CGT
[ENA]
¡û
>W141206762
AZMO01000003
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
24041
23966
-
Thr
CGT
[ENA]
¡û
>W141695543
JMEB01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
512
437
-
Thr
CGT
[ENA]
¡û
>W1910831835
MXAV01000017
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
12762
12687
-
Thr
CGT
[ENA]
¡û
>W11168528
AFOH01000039
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
10193
10118
-
Thr
CGT
[ENA]
¡û
Identical group No.614567 (1 seq.)
>W141695578
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
15321
15246
-
Thr
CGT
[ENA]
¡û
Identical group No.629923 (1 seq.)
>W131231773
AUIS01000012
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
47101
47026
-
Thr
CGT
[ENA]
¡û
Identical group No.647394 (2 seq.)
>W1711168354
LVXZ01000113
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5315
5240
-
Thr
CGT
[ENA]
¡û
>W1610978269
LVXZ01000113
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5315
5240
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK