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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285307 (13 seq.)
>W1711220222
LXQG01000199
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
340
415
+
Thr
CGT
[ENA]
¡û
>W1711292985
LZYE01000362
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
332
257
-
Thr
CGT
[ENA]
¡û
>W1711293031
LZYF01000393
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
348
273
-
Thr
CGT
[ENA]
¡û
>W1711293073
LZYG01000364
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
332
257
-
Thr
CGT
[ENA]
¡û
>W1711293113
LZYH01001005
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
112
37
-
Thr
CGT
[ENA]
¡û
>WENV180591313
OCOV01010783
[OCOV] marine metagenome; ENVO:01000301
190
265
+
Thr
CGT
[ENA]
¢þ
>WENV181406942
OGCG01002936
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
6739
6814
+
Thr
CGT
[ENA]
¢þ
>C181033882
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
2098040
2097965
-
Thr
CGT
-
¡û
>C181130809
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1558728
1558803
+
Thr
CGT
-
¡û
>W09134922
ACVD01000082
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
686
611
-
Thr
CGT
[ENA]
¡û
>C151007972
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1402169
1402094
-
Thr
CGT
[Ensembl]
¡û
>C161041418
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
3621131
3621206
+
Thr
CGT
[Ensembl]
¡û
>W1611004694
LXQG01000199
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
340
415
+
Thr
CGT
[ENA]
¡û
Identical group No.288694 (15 seq.)
>W1710777638
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
183380
183455
+
Thr
CGT
[ENA]
¡û
>W1711010480
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
61406
61331
-
Thr
CGT
[ENA]
¡û
>WENV181296379
OFHJ01030761
[OFHJ] soil metagenome; Clay
209
284
+
Thr
CGT
[ENA]
¢þ
>C08000434
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
980108
980036
-
Thr
CGT
[Ensembl]
¡û
>C191005123
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2040722
2040647
-
Thr
CGT
-
¡û
>W141738830
JNNH01000167
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
82
7
-
Thr
CGT
[ENA]
¡û
>C09100412
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
805918
805843
-
Thr
CGT
[Ensembl]
¡û
>W1810257131
PQJK01000004
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
144987
145062
+
Thr
CGT
[ENA]
¡û
>W1810679265
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
501598
501673
+
Thr
CGT
[ENA]
¡û
>W10127978
AEFB01000499
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2709
2634
-
Thr
CGT
[ENA]
¡û
>W11135523
AEFB01000499
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2709
2634
-
Thr
CGT
[ENA]
¡û
>W1610627892
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
183354
183429
+
Thr
CGT
[ENA]
¡û
>W1610641824
LJBT01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
183380
183455
+
Thr
CGT
[ENA]
¡û
>W1610859000
LQRJ01000055
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
61406
61331
-
Thr
CGT
[ENA]
¡û
>W1710759019
LIEB01000017
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
183354
183429
+
Thr
CGT
[ENA]
¡û
Identical group No.288702 (1 seq.)
>C09300006
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1030620
1030545
-
Thr
CGT
[Ensembl]
¡û
Identical group No.304579 (27 seq.)
>W1710798741
LJTW01000164
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6669
6594
-
Thr
CGT
[ENA]
¡û
>W1710799767
LJVB01000070
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
85
10
-
Thr
CGT
[ENA]
¡û
>W1711574625
MNFU01000130
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_65_8 [MNFU]
12383
12458
+
Thr
CGT
[ENA]
¡û
>WENV180247850
OBEQ010061876
[OBEQ] groundwater metagenome; groundwater
109
34
-
Thr
CGT
[ENA]
¢þ
>WENV180256403
OBEQ010815550
[OBEQ] groundwater metagenome; groundwater
592
667
+
Thr
CGT
[ENA]
¢þ
>WENV180258802
OBEQ011044410
[OBEQ] groundwater metagenome; groundwater
516
591
+
Thr
CGT
[ENA]
¢þ
>WENV180268812
OBEQ012005160
[OBEQ] groundwater metagenome; groundwater
350
275
-
Thr
CGT
[ENA]
¢þ
>WENV180270213
OBEQ012146036
[OBEQ] groundwater metagenome; groundwater
474
399
-
Thr
CGT
[ENA]
¢þ
>WENV180297894
OBJA01107015
[OBJA] soil metagenome; sediment, water from around vicinity
107
182
+
Thr
CGT
[ENA]
¢þ
>WENV180351605
OBLQ010077934
[OBLQ] soil metagenome; soil
33
108
+
Thr
CGT
[ENA]
¢þ
>WENV180356426
OBNK01028297
[OBNK] sediment metagenome; sediment
172
247
+
Thr
CGT
[ENA]
¢þ
>WENV180690267
OCZS010001554
[OCZS] soil metagenome; soil
1602
1677
+
Thr
CGT
[ENA]
¢þ
>WENV181163903
OEIQ01335307
[OEIQ] soil metagenome; soil
33
108
+
Thr
CGT
[ENA]
¢þ
>W1910697425
MEKS01000022
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
69032
68957
-
Thr
CGT
[ENA]
¡û
>W1910697550
MEKV01000059
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
32386
32311
-
Thr
CGT
[ENA]
¡û
>W1910697760
MELA01000136
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
1916
1841
-
Thr
CGT
[ENA]
¡û
>W1910697813
MELC01000080
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
95595
95520
-
Thr
CGT
[ENA]
¡û
>W1911494133
OBKC01025783
Unclassified
bacterium [OBKC]
309
234
-
Thr
CGT
[ENA]
¡û
>ENV09000111
ABSN01012898
Freshwater sediment metagenome lwFormaldehyde_C1
794
719
-
Thr
CGT
[ENA]
¡û
>ENV09000132
ABSN01015955
Freshwater sediment metagenome lwFormaldehyde_C1
284
359
+
Thr
CGT
[ENA]
¡û
>W1510021745
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
1972928
1973003
+
Thr
CGT
[ENA]
¡û
>W1610046120
BBCC01000155
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
10692
10767
+
Thr
CGT
[ENA]
¡û
>W1610662698
LJTW01000164
Gammaproteobacteria
Thiotrichales bacterium SG8_50 [LJTW]
6669
6594
-
Thr
CGT
[ENA]
¡û
>W1610663724
LJVB01000070
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
85
10
-
Thr
CGT
[ENA]
¡û
>WENV077639
AAFX01079449
Soil microbial communities from Minnesota Farm
944
869
-
Thr
CGT
[ENA]
>WENV077896
AAFX01120396
Soil microbial communities from Minnesota Farm
607
684
+
Thr
CGT
[ENA]
>W1710042916
BBCC01000155
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
10692
10767
+
Thr
CGT
[ENA]
¡û
Identical group No.307021 (11 seq.)
>W1711168354
LVXZ01000113
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5315
5240
-
Thr
CGT
[ENA]
¡û
>W1711169897
LVZL01000093
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
8020
7945
-
Thr
CGT
[ENA]
¡û
>W1711312176
MASQ01000094
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42685
42760
+
Thr
CGT
[ENA]
¡û
>W141262906
CCCS020000034
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
107428
107503
+
Thr
CGT
[ENA]
¡û
>WENV170008436
AOMP01005632
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV170008605
AOMQ01006165
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
303
378
+
Thr
CGT
[ENA]
¢þ
>WENV170008642
AOMQ01011219
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
303
378
+
Thr
CGT
[ENA]
¢þ
>C11100752
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1390618
1390543
-
Thr
CGT
[Ensembl]
¡û
>W11164266
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
94384
94459
+
Thr
CGT
[ENA]
¡û
>W1610978269
LVXZ01000113
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5315
5240
-
Thr
CGT
[ENA]
¡û
>W1611057377
MASQ01000094
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42685
42760
+
Thr
CGT
[ENA]
¡û
Identical group No.307024 (2 seq.)
>W141262922
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
242204
242129
-
Thr
CGT
[ENA]
¡û
>WENV170008432
AOMP01005092
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
172
247
+
Thr
CGT
[ENA]
¢þ
Identical group No.317771 (9 seq.)
>W143004119
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7072
6997
-
Thr
CGT
[ENA]
¡û
>W1730013212
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
23334
23409
+
Thr
CGT
[ENA]
¡û
>W1730023173
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
5802
5727
-
Thr
CGT
[ENA]
¡û
>W1730023174
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20795
20870
+
Thr
CGT
[ENA]
¡û
>W1730023188
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7143
7068
-
Thr
CGT
[ENA]
¡û
>W1730023202
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7175
7100
-
Thr
CGT
[ENA]
¡û
>W1730023208
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13312
13237
-
Thr
CGT
[ENA]
¡û
>W1730023212
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16610
16685
+
Thr
CGT
[ENA]
¡û
>W1730025108
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7161
7086
-
Thr
CGT
[ENA]
¡û
Identical group No.319214 (7 seq.)
>W1711190341
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
4961
5036
+
Thr
CGT
[ENA]
¡û
>W1711190461
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8213
8138
-
Thr
CGT
[ENA]
¡û
>W1711190524
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8434
8509
+
Thr
CGT
[ENA]
¡û
>W1711190734
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
5982
6057
+
Thr
CGT
[ENA]
¡û
>W1711293143
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8231
8156
-
Thr
CGT
[ENA]
¡û
>W141206749
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
137723
137798
+
Thr
CGT
[ENA]
¡û
>W141695578
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
15321
15246
-
Thr
CGT
[ENA]
¡û
Identical group No.319217 (12 seq.)
>W1711190265
LWRY01000135
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
13627
13552
-
Thr
CGT
[ENA]
¡û
>W1711190383
LWRZ01000283
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
5475
5550
+
Thr
CGT
[ENA]
¡û
>W1711190441
LWSA01000160
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
35217
35292
+
Thr
CGT
[ENA]
¡û
>W1711190564
LWSB01000236
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
56043
56118
+
Thr
CGT
[ENA]
¡û
>W1711190639
LWSC01000286
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
2561
2486
-
Thr
CGT
[ENA]
¡û
>W1711190696
LWSD01000164
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
28871
28946
+
Thr
CGT
[ENA]
¡û
>W1711293154
LZYI01000021
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
24168
24093
-
Thr
CGT
[ENA]
¡û
>W1711585813
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1789733
1789808
+
Thr
CGT
[ENA]
¡û
>W141206762
AZMO01000003
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
24041
23966
-
Thr
CGT
[ENA]
¡û
>W141695543
JMEB01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
512
437
-
Thr
CGT
[ENA]
¡û
>W1910831835
MXAV01000017
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
12762
12687
-
Thr
CGT
[ENA]
¡û
>W11168528
AFOH01000039
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
10193
10118
-
Thr
CGT
[ENA]
¡û
Identical group No.385996 (1 seq.)
>W131231773
AUIS01000012
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
47101
47026
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK