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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403739 (1 seq.)
>C09100404
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028407
1028333
-
Glu
CTC
[Ensembl]
¡û
Identical group No.422422 (9 seq.)
>W1711190250
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
14021
13947
-
Glu
CTC
[ENA]
¡û
>W1711190325
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
21659
21733
+
Glu
CTC
[ENA]
¡û
>W1711190429
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6279
6205
-
Glu
CTC
[ENA]
¡û
>W1711190557
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6311
6237
-
Glu
CTC
[ENA]
¡û
>W1711190605
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
12448
12374
-
Glu
CTC
[ENA]
¡û
>W1711190666
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17474
17548
+
Glu
CTC
[ENA]
¡û
>W1711293191
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6297
6223
-
Glu
CTC
[ENA]
¡û
>W141206814
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
6208
6134
-
Glu
CTC
[ENA]
¡û
>W1710743667
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
24198
24272
+
Glu
CTC
[ENA]
¡û
Identical group No.423340 (7 seq.)
>W1711190342
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
5871
5945
+
Glu
CTC
[ENA]
¡û
>W1711190462
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7303
7229
-
Glu
CTC
[ENA]
¡û
>W1711190525
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9344
9418
+
Glu
CTC
[ENA]
¡û
>W1711190735
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
6892
6966
+
Glu
CTC
[ENA]
¡û
>W1711293144
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7321
7247
-
Glu
CTC
[ENA]
¡û
>W141206750
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
138633
138707
+
Glu
CTC
[ENA]
¡û
>W141695579
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
14411
14337
-
Glu
CTC
[ENA]
¡û
Identical group No.457040 (2 seq.)
>W10127949
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1320
1246
-
Glu
CTC
[ENA]
¡û
>W11135494
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1320
1246
-
Glu
CTC
[ENA]
¡û
Identical group No.476434 (1 seq.)
>W141738822
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
15986
16060
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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