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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = CTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481585 (41 seq.)
>W1710777631
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26982
26909
-
Gln
CTG
[ENA]
¡û
>W1711010474
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
26915
26842
-
Gln
CTG
[ENA]
¡û
>W1711168363
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
1745
1672
-
Gln
CTG
[ENA]
¡û
>W1711169874
LVZL01000042
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
29350
29277
-
Gln
CTG
[ENA]
¡û
>W1711220181
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
9653
9726
+
Gln
CTG
[ENA]
¡û
>W1711292972
LZYE01000232
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
184
111
-
Gln
CTG
[ENA]
¡û
>W1711292995
LZYF01000024
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
48985
49058
+
Gln
CTG
[ENA]
¡û
>W1711293065
LZYG01000232
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
184
111
-
Gln
CTG
[ENA]
¡û
>W1711293089
LZYH01000406
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
66
139
+
Gln
CTG
[ENA]
¡û
>W1711312163
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
14536
14609
+
Gln
CTG
[ENA]
¡û
>W131233928
AUKJ01000021
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AUKJ]
159326
159253
-
Gln
CTG
[ENA]
¡û
>C013286
AE017282
Gammaproteobacteria
Methylococcus capsulatus str. Bath [AE017282]
950482
950555
+
Gln
CTG
[Ensembl]
¡û
>W141041596
AMCE01000079
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AMCE]
8109
8182
+
Gln
CTG
[ENA]
¡û
>WENV181171070
OEIV010140037
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
213
286
+
Gln
CTG
[ENA]
¢þ
>WENV181296325
OFHJ01025688
[OFHJ] soil metagenome; Clay
227
300
+
Gln
CTG
[ENA]
¢þ
>WENV181406449
OGCG01000282
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
14084
14011
-
Gln
CTG
[ENA]
¢þ
>W141262901
CCCS020000023
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
286363
286436
+
Gln
CTG
[ENA]
¡û
>C08000415
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2336651
2336724
+
Gln
CTG
[Ensembl]
¡û
>WENV170008442
AOMP01006183
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
179
106
-
Gln
CTG
[ENA]
¢þ
>WENV170008447
AOMP01006955
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
93
20
-
Gln
CTG
[ENA]
¢þ
>WENV170013551
AUZY01001045
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
343
270
-
Gln
CTG
[ENA]
¢þ
>C181130841
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
410133
410060
-
Gln
CTG
-
¡û
>C191005103
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
678385
678458
+
Gln
CTG
-
¡û
>W09134905
ACVD01000064
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
73501
73428
-
Gln
CTG
[ENA]
¡û
>W141738858
JNNH01001728
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
394
467
+
Gln
CTG
[ENA]
¡û
>C09100368
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2441447
2441520
+
Gln
CTG
[Ensembl]
¡û
>W1810257122
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
116121
116048
-
Gln
CTG
[ENA]
¡û
>W1810679287
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
266948
267021
+
Gln
CTG
[ENA]
¡û
>C151007979
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
515050
514977
-
Gln
CTG
[Ensembl]
¡û
>W10127984
AEFB01000744
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1568
1641
+
Gln
CTG
[ENA]
¡û
>C11100520
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
496959
496886
-
Gln
CTG
[Ensembl]
¡û
>C11100758
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
575125
575052
-
Gln
CTG
[Ensembl]
¡û
>W11135529
AEFB01000744
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1568
1641
+
Gln
CTG
[ENA]
¡û
>W11164290
AFJD01000016
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
36455
36528
+
Gln
CTG
[ENA]
¡û
>W1610627900
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
12155
12228
+
Gln
CTG
[ENA]
¡û
>W1610641817
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26982
26909
-
Gln
CTG
[ENA]
¡û
>W1610858994
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
26915
26842
-
Gln
CTG
[ENA]
¡û
>W1610978278
LVXZ01000166
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
1745
1672
-
Gln
CTG
[ENA]
¡û
>W1611004653
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
9653
9726
+
Gln
CTG
[ENA]
¡û
>W1611057364
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
14536
14609
+
Gln
CTG
[ENA]
¡û
>W1710759027
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
12155
12228
+
Gln
CTG
[ENA]
¡û
Identical group No.482458 (1 seq.)
>C09100406
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028132
1028059
-
Gln
CTG
[Ensembl]
¡û
Identical group No.487847 (1 seq.)
>W141262928
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239674
239601
-
Gln
CTG
[ENA]
¡û
Identical group No.491023 (15 seq.)
>W131164259
ARAN01000144
Zetaproteobacteria
zeta proteobacterium SCGC AB-133-C04 [ARAN]
393
320
-
Gln
CTG
[ENA]
¡û
>W131164298
ARAO01000230
Zetaproteobacteria
zeta proteobacterium SCGC AB-137-I08 [ARAO]
11802
11875
+
Gln
CTG
[ENA]
¡û
>W1711190228
LWRY01000015
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
23043
23116
+
Gln
CTG
[ENA]
¡û
>W1711190297
LWRZ01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
16903
16976
+
Gln
CTG
[ENA]
¡û
>W1711190395
LWSA01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
28616
28543
-
Gln
CTG
[ENA]
¡û
>W1711190486
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
75304
75231
-
Gln
CTG
[ENA]
¡û
>W1711190574
LWSC01000004
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
23043
23116
+
Gln
CTG
[ENA]
¡û
>W1711190643
LWSD01000005
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
53952
53879
-
Gln
CTG
[ENA]
¡û
>W1711293201
LZYI01000139
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
24345
24272
-
Gln
CTG
[ENA]
¡û
>W1711585817
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2388767
2388840
+
Gln
CTG
[ENA]
¡û
>W141206764
AZMO01000004
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
73167
73094
-
Gln
CTG
[ENA]
¡û
>W141695549
JMEB01000082
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
9177
9104
-
Gln
CTG
[ENA]
¡û
>W1910831843
MXAV01000033
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
112144
112071
-
Gln
CTG
[ENA]
¡û
>W11168540
AFOH01000073
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
1240
1313
+
Gln
CTG
[ENA]
¡û
>W1710743707
LGYM01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
158750
158823
+
Gln
CTG
[ENA]
¡û
Identical group No.491382 (6 seq.)
>W1711190367
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9301
9374
+
Gln
CTG
[ENA]
¡û
>W1711190509
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1981
2054
+
Gln
CTG
[ENA]
¡û
>W1711190719
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
440
367
-
Gln
CTG
[ENA]
¡û
>W1711293128
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14684
14611
-
Gln
CTG
[ENA]
¡û
>W141206734
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131270
131343
+
Gln
CTG
[ENA]
¡û
>W141695563
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
22106
22033
-
Gln
CTG
[ENA]
¡û
Identical group No.507223 (2 seq.)
>W10127951
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
694
621
-
Gln
CTG
[ENA]
¡û
>W11135496
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
694
621
-
Gln
CTG
[ENA]
¡û
Identical group No.511933 (5 seq.)
>W131231726
AUIR01000006
Alphaproteobacteria
Thalassobaculum salexigens DSM 19539 [AUIR]
396882
396809
-
Gln
CTG
[ENA]
¡û
>W131231797
AUIS01000041
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
5750
5823
+
Gln
CTG
[ENA]
¡û
>WENV180283346
OBIC01327861
[OBIC] beach sand metagenome; beach sand
74
147
+
Gln
CTG
[ENA]
¢þ
>WENV180592167
OCOV01209623
[OCOV] marine metagenome; ENVO:01000301
240
167
-
Gln
CTG
[ENA]
¢þ
>W1911708729
QOZR01000003
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
380436
380509
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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