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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9323 (5 seq.)
>W1711190361
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7890
7983
+
Ser
GCT
[ENA]
¡û
>W1711190503
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
570
663
+
Ser
GCT
[ENA]
¡û
>W1711190713
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1851
1758
-
Ser
GCT
[ENA]
¡û
>W1711293122
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
16095
16002
-
Ser
GCT
[ENA]
¡û
>W141206728
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
129859
129952
+
Ser
GCT
[ENA]
¡û
Identical group No.11427 (1 seq.)
>W141695557
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23509
23416
-
Ser
GCT
[ENA]
¡û
Identical group No.16356 (1 seq.)
>W1730025098
LZYH01000961
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
1068
1158
+
Ser
GCT
[ENA]
¡û
Identical group No.18934 (1 seq.)
>W131231752
AUIS01000001
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
25663
25755
+
Ser
GCT
[ENA]
¡û
Identical group No.24831 (2 seq.)
>W1710799777
LJVB01000122
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6789
6880
+
Ser
GCT
[ENA]
¡û
>W1610663734
LJVB01000122
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
6789
6880
+
Ser
GCT
[ENA]
¡û
Identical group No.52915 (9 seq.)
>W1711190272
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7242
7153
-
Ser
GCT
[ENA]
¡û
>W1711190311
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
19355
19444
+
Ser
GCT
[ENA]
¡û
>W1711190415
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8583
8494
-
Ser
GCT
[ENA]
¡û
>W1711190543
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8615
8526
-
Ser
GCT
[ENA]
¡û
>W1711190591
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
14752
14663
-
Ser
GCT
[ENA]
¡û
>W1711190652
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
15170
15259
+
Ser
GCT
[ENA]
¡û
>W1711293177
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8601
8512
-
Ser
GCT
[ENA]
¡û
>W141206800
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8512
8423
-
Ser
GCT
[ENA]
¡û
>W1710743653
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21894
21983
+
Ser
GCT
[ENA]
¡û
Identical group No.73290 (1 seq.)
>C09100394
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033617
1033529
-
Ser
GCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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