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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80972 (9 seq.)
>W1711190273
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7144
7058
-
Tyr
GTA
[ENA]
¡û
>W1711190312
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
19453
19539
+
Tyr
GTA
[ENA]
¡û
>W1711190416
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8485
8399
-
Tyr
GTA
[ENA]
¡û
>W1711190544
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8517
8431
-
Tyr
GTA
[ENA]
¡û
>W1711190592
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
14654
14568
-
Tyr
GTA
[ENA]
¡û
>W1711190653
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
15268
15354
+
Tyr
GTA
[ENA]
¡û
>W1711293178
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8503
8417
-
Tyr
GTA
[ENA]
¡û
>W141206801
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8414
8328
-
Tyr
GTA
[ENA]
¡û
>W1710743654
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21992
22078
+
Tyr
GTA
[ENA]
¡û
Identical group No.119255 (1 seq.)
>C09200002
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033259
1033175
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.123009 (1 seq.)
>W141262917
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
243262
243178
-
Pseudo
GTA
[ENA]
¡û
Identical group No.125225 (6 seq.)
>W1711190362
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8152
8236
+
Tyr
GTA
[ENA]
¡û
>W1711190504
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
832
916
+
Tyr
GTA
[ENA]
¡û
>W1711190714
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1589
1505
-
Tyr
GTA
[ENA]
¡û
>W1711293123
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15833
15749
-
Tyr
GTA
[ENA]
¡û
>W141206729
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
130121
130205
+
Tyr
GTA
[ENA]
¡û
>W141695558
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23247
23163
-
Tyr
GTA
[ENA]
¡û
Identical group No.134792 (2 seq.)
>W141738812
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
9913
9997
+
Pseudo
GTA
[ENA]
¡û
>W11200045
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1685
1601
-
Tyr
GTA
[ENA]
¡û
Identical group No.134793 (1 seq.)
>W11200046
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2451
2367
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK