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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GTA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123356 (9 seq.)
>W1711190273
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7144
7058
-
Tyr
GTA
[ENA]
¡û
>W1711190312
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
19453
19539
+
Tyr
GTA
[ENA]
¡û
>W1711190416
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8485
8399
-
Tyr
GTA
[ENA]
¡û
>W1711190544
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8517
8431
-
Tyr
GTA
[ENA]
¡û
>W1711190592
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
14654
14568
-
Tyr
GTA
[ENA]
¡û
>W1711190653
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
15268
15354
+
Tyr
GTA
[ENA]
¡û
>W1711293178
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8503
8417
-
Tyr
GTA
[ENA]
¡û
>W141206801
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8414
8328
-
Tyr
GTA
[ENA]
¡û
>W1710743654
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21992
22078
+
Tyr
GTA
[ENA]
¡û
Identical group No.181024 (27 seq.)
>W1710777623
LJBT01000002
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
42275
42191
-
Tyr
GTA
[ENA]
¡û
>W1711010490
LQRJ01000069
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
48548
48464
-
Tyr
GTA
[ENA]
¡û
>W1711168333
LVXZ01000041
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5854
5938
+
Tyr
GTA
[ENA]
¡û
>W1711220218
LXQG01000189
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
25585
25669
+
Tyr
GTA
[ENA]
¡û
>W1711292978
LZYE01000255
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
14228
14312
+
Tyr
GTA
[ENA]
¡û
>W1711292996
LZYF01000026
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
18513
18429
-
Tyr
GTA
[ENA]
¡û
>W1711293038
LZYG01000022
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
46
130
+
Tyr
GTA
[ENA]
¡û
>W1711293100
LZYH01000631
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
1373
1457
+
Tyr
GTA
[ENA]
¡û
>W131231791
AUIS01000034
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
18514
18598
+
Tyr
GTA
[ENA]
¡û
>WENV181406422
OGCG01000244
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
391
307
-
Tyr
GTA
[ENA]
¢þ
>C08000393
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
453541
453625
+
Tyr
GTA
[Ensembl]
¡û
>W09134886
ACVD01000014
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
712
628
-
Tyr
GTA
[ENA]
¡û
>C181130795
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
517754
517838
+
Tyr
GTA
-
¡û
>C191005128
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1077744
1077660
-
Tyr
GTA
-
¡û
>C09100346
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
275027
275111
+
Tyr
GTA
[Ensembl]
¡û
>W1810257142
PQJK01000011
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
25254
25338
+
Tyr
GTA
[ENA]
¡û
>W1810679269
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
1293136
1293052
-
Tyr
GTA
[ENA]
¡û
>C151007936
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
605080
605164
+
Tyr
GTA
[Ensembl]
¡û
>W10127992
AEFB01001065
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2475
2559
+
Tyr
GTA
[ENA]
¡û
>C11100479
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
597295
597379
+
Tyr
GTA
[Ensembl]
¡û
>W11135537
AEFB01001065
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2475
2559
+
Tyr
GTA
[ENA]
¡û
>W1610627917
LIEB01000044
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
187725
187809
+
Tyr
GTA
[ENA]
¡û
>W1610641809
LJBT01000002
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
42275
42191
-
Tyr
GTA
[ENA]
¡û
>W1610859010
LQRJ01000069
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
48548
48464
-
Tyr
GTA
[ENA]
¡û
>W1610978248
LVXZ01000041
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
5854
5938
+
Tyr
GTA
[ENA]
¡û
>W1611004690
LXQG01000189
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
25585
25669
+
Tyr
GTA
[ENA]
¡û
>W1710759044
LIEB01000044
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
187725
187809
+
Tyr
GTA
[ENA]
¡û
Identical group No.181912 (1 seq.)
>C09200002
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033259
1033175
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.187516 (1 seq.)
>W141262917
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
243262
243178
-
Pseudo
GTA
[ENA]
¡û
Identical group No.187517 (9 seq.)
>W1711169854
LVZL01000001
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
58183
58099
-
Tyr
GTA
[ENA]
¡û
>W1711312144
MASQ01000020
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4115
4199
+
Tyr
GTA
[ENA]
¡û
>W141262934
CCCS020000037
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
39758
39674
-
Tyr
GTA
[ENA]
¡û
>WENV170008370
AOMP01000795
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1570
1654
+
Tyr
GTA
[ENA]
¢þ
>WENV170008537
AOMQ01002396
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1153
1237
+
Tyr
GTA
[ENA]
¢þ
>WENV170008539
AOMQ01002414
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
129
45
-
Tyr
GTA
[ENA]
¢þ
>C11100733
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2702805
2702721
-
Tyr
GTA
[Ensembl]
¡û
>W11164260
AFJD01000003
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
224066
224150
+
Tyr
GTA
[ENA]
¡û
>W1611057345
MASQ01000020
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4115
4199
+
Tyr
GTA
[ENA]
¡û
Identical group No.190554 (13 seq.)
>W1711190282
LWRY01000237
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
21903
21987
+
Tyr
GTA
[ENA]
¡û
>W1711190301
LWRZ01000012
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
16440
16356
-
Tyr
GTA
[ENA]
¡û
>W1711190438
LWSA01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
436
352
-
Tyr
GTA
[ENA]
¡û
>W1711190571
LWSB01000260
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
22634
22718
+
Tyr
GTA
[ENA]
¡û
>W1711190618
LWSC01000124
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
27999
28083
+
Tyr
GTA
[ENA]
¡û
>W1711190681
LWSD01000101
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
11351
11267
-
Tyr
GTA
[ENA]
¡û
>W1711293169
LZYI01000079
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
22620
22704
+
Tyr
GTA
[ENA]
¡û
>W1711585796
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
354174
354258
+
Tyr
GTA
[ENA]
¡û
>W141206794
AZMO01000067
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
22531
22615
+
Tyr
GTA
[ENA]
¡û
>W141695601
JMEB01000250
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
10486
10570
+
Tyr
GTA
[ENA]
¡û
>W1910831815
MXAV01000004
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
149915
149999
+
Tyr
GTA
[ENA]
¡û
>W11168537
AFOH01000069
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
14126
14042
-
Tyr
GTA
[ENA]
¡û
>W1710743693
LGYM01000030
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
58216
58132
-
Tyr
GTA
[ENA]
¡û
Identical group No.190979 (6 seq.)
>W1711190362
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8152
8236
+
Tyr
GTA
[ENA]
¡û
>W1711190504
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
832
916
+
Tyr
GTA
[ENA]
¡û
>W1711190714
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1589
1505
-
Tyr
GTA
[ENA]
¡û
>W1711293123
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15833
15749
-
Tyr
GTA
[ENA]
¡û
>W141206729
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
130121
130205
+
Tyr
GTA
[ENA]
¡û
>W141695558
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23247
23163
-
Tyr
GTA
[ENA]
¡û
Identical group No.197394 (8 seq.)
>W1710799180
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
13907
13991
+
Tyr
GTA
[ENA]
¡û
>W1710799770
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
511
427
-
Tyr
GTA
[ENA]
¡û
>WENV180254441
OBEQ010630353
[OBEQ] groundwater metagenome; groundwater
372
288
-
Tyr
GTA
[ENA]
¢þ
>WENV180350782
OBLQ010010801
[OBLQ] soil metagenome; soil
3021
3105
+
Tyr
GTA
[ENA]
¢þ
>WENV181288191
OFGY01023659
[OFGY] soil metagenome; Clay
640
556
-
Tyr
GTA
[ENA]
¢þ
>C181000790
AP014879
Gammaproteobacteria
Sulfuricaulis limicola HA5 [AP014879]
2358896
2358812
-
Tyr
GTA
-
¡û
>W1610663137
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
13907
13991
+
Tyr
GTA
[ENA]
¡û
>W1610663727
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
511
427
-
Tyr
GTA
[ENA]
¡û
Identical group No.207299 (1 seq.)
>W11200045
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1685
1601
-
Tyr
GTA
[ENA]
¡û
Identical group No.207300 (1 seq.)
>W11200046
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2451
2367
-
Tyr
GTA
[ENA]
¡û
Identical group No.215968 (1 seq.)
>W141738812
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
9913
9997
+
Pseudo
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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