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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281455 (6 seq.)
>W1711168342
LVXZ01000074
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
16468
16544
+
Arg
TCT
[ENA]
¡û
>C08000435
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
944354
944281
-
Arg
TCT
[Ensembl]
¡û
>C09100413
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
770164
770088
-
Arg
TCT
[Ensembl]
¡û
>W10127998
AEFB01001230
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
376
452
+
Arg
TCT
[ENA]
¡û
>W11135543
AEFB01001230
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
376
452
+
Arg
TCT
[ENA]
¡û
>W1610978257
LVXZ01000074
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
16468
16544
+
Arg
TCT
[ENA]
¡û
Identical group No.319274 (2 seq.)
>C191005124
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2001402
2001326
-
Arg
TCT
-
¡û
>W1810257132
PQJK01000004
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
206763
206839
+
Arg
TCT
[ENA]
¡û
Identical group No.322432 (9 seq.)
>W1711190254
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
12573
12497
-
Arg
TCT
[ENA]
¡û
>W1711190329
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
23107
23183
+
Arg
TCT
[ENA]
¡û
>W1711190433
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
4831
4755
-
Arg
TCT
[ENA]
¡û
>W1711190561
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
4863
4787
-
Arg
TCT
[ENA]
¡û
>W1711190609
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
11000
10924
-
Arg
TCT
[ENA]
¡û
>W1711190670
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
18922
18998
+
Arg
TCT
[ENA]
¡û
>W1711293195
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
4849
4773
-
Arg
TCT
[ENA]
¡û
>W141206818
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
4760
4684
-
Arg
TCT
[ENA]
¡û
>W1710743671
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
25646
25722
+
Arg
TCT
[ENA]
¡û
Identical group No.322434 (11 seq.)
>W1711190352
LWRZ01000120
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
25012
25088
+
Arg
TCT
[ENA]
¡û
>W1711190408
LWSA01000095
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
31692
31616
-
Arg
TCT
[ENA]
¡û
>W1711190481
LWSB01000012
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
22209
22133
-
Arg
TCT
[ENA]
¡û
>W1711190688
LWSD01000117
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
17515
17591
+
Arg
TCT
[ENA]
¡û
>W1711293211
LZYI01000244
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15602
15678
+
Arg
TCT
[ENA]
¡û
>W1711585814
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1982193
1982269
+
Arg
TCT
[ENA]
¡û
>W141206779
AZMO01000026
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
31623
31547
-
Arg
TCT
[ENA]
¡û
>W141695596
JMEB01000202
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
2305
2381
+
Arg
TCT
[ENA]
¡û
>W1910831832
MXAV01000013
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
80235
80159
-
Arg
TCT
[ENA]
¡û
>W11168554
AFOH01000132
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
2305
2381
+
Arg
TCT
[ENA]
¡û
>W1710743684
LGYM01000021
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
4444
4368
-
Arg
TCT
[ENA]
¡û
Identical group No.361031 (4 seq.)
>W1710799189
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1681
1757
+
Arg
TCT
[ENA]
¡û
>W1710799761
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1636
1712
+
Arg
TCT
[ENA]
¡û
>W1610663146
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
1681
1757
+
Arg
TCT
[ENA]
¡û
>W1610663718
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
1636
1712
+
Arg
TCT
[ENA]
¡û
Identical group No.361847 (2 seq.)
>W1711190267
LWRY01000145
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
19250
19174
-
Arg
TCT
[ENA]
¡û
>W1711190585
LWSC01000019
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
26857
26933
+
Arg
TCT
[ENA]
¡û
Identical group No.399159 (2 seq.)
>W1711312173
MASQ01000091
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2045
1969
-
Arg
TCT
[ENA]
¡û
>W1611057374
MASQ01000091
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
2045
1969
-
Arg
TCT
[ENA]
¡û
Identical group No.402069 (2 seq.)
>W10127973
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1035
959
-
Arg
TCT
[ENA]
¡û
>W11135518
AEFB01000308
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1035
959
-
Arg
TCT
[ENA]
¡û
Identical group No.430843 (1 seq.)
>W131231756
AUIS01000001
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
70568
70492
-
Arg
TCT
[ENA]
¡û
Identical group No.463082 (1 seq.)
>C09100411
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027220
1027145
-
Arg
TCT
[Ensembl]
¡û
Identical group No.642236 (1 seq.)
>W141738826
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
17133
17208
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK