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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288701 (1 seq.)
>C09300005
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1031490
1031415
-
Thr
TGT
[Ensembl]
¡û
Identical group No.317912 (9 seq.)
>W1711190278
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6203
6128
-
Thr
TGT
[ENA]
¡û
>W1711190317
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20394
20469
+
Thr
TGT
[ENA]
¡û
>W1711190421
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7544
7469
-
Thr
TGT
[ENA]
¡û
>W1711190549
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7576
7501
-
Thr
TGT
[ENA]
¡û
>W1711190597
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13713
13638
-
Thr
TGT
[ENA]
¡û
>W1711190658
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16209
16284
+
Thr
TGT
[ENA]
¡û
>W1711293183
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7562
7487
-
Thr
TGT
[ENA]
¡û
>W141206806
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7473
7398
-
Thr
TGT
[ENA]
¡û
>W1710743659
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22933
23008
+
Thr
TGT
[ENA]
¡û
Identical group No.319211 (7 seq.)
>W1711190373
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
10423
10498
+
Thr
TGT
[ENA]
¡û
>W1711190469
LWSA01000320
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
2062
1987
-
Thr
TGT
[ENA]
¡û
>W1711190515
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
3103
3178
+
Thr
TGT
[ENA]
¡û
>W1711190725
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
651
726
+
Thr
TGT
[ENA]
¡û
>W1711293134
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
13562
13487
-
Thr
TGT
[ENA]
¡û
>W141206740
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
132392
132467
+
Thr
TGT
[ENA]
¡û
>W141695569
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
20650
20575
-
Thr
TGT
[ENA]
¡û
Identical group No.368451 (1 seq.)
>W11300863
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1078
1003
-
Thr
TGT
[ENA]
¡û
Identical group No.376908 (2 seq.)
>W1710798683
LJTU01000090
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
3382
3457
+
Thr
TGT
[ENA]
¡û
>W1610662640
LJTU01000090
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
3382
3457
+
Thr
TGT
[ENA]
¡û
Identical group No.393277 (1 seq.)
>W141738817
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
11107
11182
+
Thr
TGT
[ENA]
¡û
Identical group No.415592 (1 seq.)
>W143006017
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
242796
242722
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK