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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458051 (11 seq.)
>W1711220197
LXQG01000062
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
90235
90160
-
Thr
TGT
[ENA]
¡û
>W1711292975
LZYE01000243
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
23353
23278
-
Thr
TGT
[ENA]
¡û
>W1711293025
LZYF01000281
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
23337
23262
-
Thr
TGT
[ENA]
¡û
>W1711293077
LZYG01000372
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
28736
28661
-
Thr
TGT
[ENA]
¡û
>W1711293097
LZYH01000546
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
984
909
-
Thr
TGT
[ENA]
¡û
>WENV181406391
OGCG01000199
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
25450
25375
-
Thr
TGT
[ENA]
¢þ
>C181130813
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
2116231
2116306
+
Thr
TGT
-
¡û
>W09134891
ACVD01000046
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
14082
14157
+
Thr
TGT
[ENA]
¡û
>C151007953
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2160617
2160692
+
Thr
TGT
[Ensembl]
¡û
>C11100496
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2317076
2317151
+
Thr
TGT
[Ensembl]
¡û
>W1611004669
LXQG01000062
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
90235
90160
-
Thr
TGT
[ENA]
¡û
Identical group No.462543 (7 seq.)
>C08000400
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
693928
694003
+
Thr
TGT
[Ensembl]
¡û
>C191005109
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1743023
1743098
+
Thr
TGT
-
¡û
>W1910831851
MXAV01000036
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
72911
72986
+
Thr
TGT
[ENA]
¡û
>C09100353
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
516965
517040
+
Thr
TGT
[Ensembl]
¡û
>W1810257138
PQJK01000005
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
6673
6598
-
Thr
TGT
[ENA]
¡û
>W10128004
AEFB01001406
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
140
215
+
Thr
TGT
[ENA]
¡û
>W11135549
AEFB01001406
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
140
215
+
Thr
TGT
[ENA]
¡û
Identical group No.462552 (1 seq.)
>C09300005
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1031490
1031415
-
Thr
TGT
[Ensembl]
¡û
Identical group No.490926 (7 seq.)
>W1711168355
LVXZ01000116
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
273
198
-
Thr
TGT
[ENA]
¡û
>W1711169866
LVZL01000019
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
19819
19744
-
Thr
TGT
[ENA]
¡û
>W141262952
CCCS020000057
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
48150
48075
-
Thr
TGT
[ENA]
¡û
>WENV170008367
AOMP01000558
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
2252
2177
-
Thr
TGT
[ENA]
¢þ
>C11100745
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
2234860
2234785
-
Thr
TGT
[Ensembl]
¡û
>W11164263
AFJD01000004
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
68063
68138
+
Thr
TGT
[ENA]
¡û
>W1610978270
LVXZ01000116
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
273
198
-
Thr
TGT
[ENA]
¡û
Identical group No.506149 (22 seq.)
>W1710777645
LJBT01000016
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
93394
93319
-
Thr
TGT
[ENA]
¡û
>W1711010466
LQRJ01000033
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
69230
69305
+
Thr
TGT
[ENA]
¡û
>W1711190260
LWRY01000094
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
4159
4084
-
Thr
TGT
[ENA]
¡û
>W1711190374
LWRZ01000220
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
1022
1097
+
Thr
TGT
[ENA]
¡û
>W1711190409
LWSA01000098
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5296
5221
-
Thr
TGT
[ENA]
¡û
>W1711190539
LWSB01000178
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
1004
1079
+
Thr
TGT
[ENA]
¡û
>W1711190623
LWSC01000137
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
1011
1086
+
Thr
TGT
[ENA]
¡û
>W1711190675
LWSD01000060
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16208
16283
+
Thr
TGT
[ENA]
¡û
>W1711293168
LZYI01000074
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5296
5221
-
Thr
TGT
[ENA]
¡û
>W1711312156
MASQ01000074
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4459
4384
-
Thr
TGT
[ENA]
¡û
>W1711585830
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1807872
1807797
-
Thr
TGT
[ENA]
¡û
>WENV181296179
OFHJ01012147
[OFHJ] soil metagenome; Clay
752
677
-
Thr
TGT
[ENA]
¢þ
>W141206792
AZMO01000053
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
38945
39020
+
Thr
TGT
[ENA]
¡û
>W141695600
JMEB01000227
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
5126
5201
+
Thr
TGT
[ENA]
¡û
>W1810679276
QKQP01000001
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
1056184
1056109
-
Thr
TGT
[ENA]
¡û
>W11168524
AFOH01000037
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
22037
22112
+
Thr
TGT
[ENA]
¡û
>W1610627885
LIEB01000007
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69271
69346
+
Thr
TGT
[ENA]
¡û
>W1610641831
LJBT01000016
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
93394
93319
-
Thr
TGT
[ENA]
¡û
>W1610858986
LQRJ01000033
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
69230
69305
+
Thr
TGT
[ENA]
¡û
>W1611057357
MASQ01000074
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4459
4384
-
Thr
TGT
[ENA]
¡û
>W1710743686
LGYM01000026
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
128256
128331
+
Thr
TGT
[ENA]
¡û
>W1710759012
LIEB01000007
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
69271
69346
+
Thr
TGT
[ENA]
¡û
Identical group No.508430 (9 seq.)
>W1711190278
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6203
6128
-
Thr
TGT
[ENA]
¡û
>W1711190317
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20394
20469
+
Thr
TGT
[ENA]
¡û
>W1711190421
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7544
7469
-
Thr
TGT
[ENA]
¡û
>W1711190549
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7576
7501
-
Thr
TGT
[ENA]
¡û
>W1711190597
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13713
13638
-
Thr
TGT
[ENA]
¡û
>W1711190658
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16209
16284
+
Thr
TGT
[ENA]
¡û
>W1711293183
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7562
7487
-
Thr
TGT
[ENA]
¡û
>W141206806
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7473
7398
-
Thr
TGT
[ENA]
¡û
>W1710743659
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22933
23008
+
Thr
TGT
[ENA]
¡û
Identical group No.510584 (7 seq.)
>W1711190373
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
10423
10498
+
Thr
TGT
[ENA]
¡û
>W1711190469
LWSA01000320
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
2062
1987
-
Thr
TGT
[ENA]
¡û
>W1711190515
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
3103
3178
+
Thr
TGT
[ENA]
¡û
>W1711190725
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
651
726
+
Thr
TGT
[ENA]
¡û
>W1711293134
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
13562
13487
-
Thr
TGT
[ENA]
¡û
>W141206740
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
132392
132467
+
Thr
TGT
[ENA]
¡û
>W141695569
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
20650
20575
-
Thr
TGT
[ENA]
¡û
Identical group No.551280 (4 seq.)
>W1710799179
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
11429
11504
+
Thr
TGT
[ENA]
¡û
>W1710799769
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
3062
2987
-
Thr
TGT
[ENA]
¡û
>W1610663136
LJUK01000073
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
11429
11504
+
Thr
TGT
[ENA]
¡û
>W1610663726
LJVB01000099
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
3062
2987
-
Thr
TGT
[ENA]
¡û
Identical group No.597204 (1 seq.)
>W11300863
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1078
1003
-
Thr
TGT
[ENA]
¡û
Identical group No.612649 (2 seq.)
>W1710798683
LJTU01000090
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
3382
3457
+
Thr
TGT
[ENA]
¡û
>W1610662640
LJTU01000090
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
3382
3457
+
Thr
TGT
[ENA]
¡û
Identical group No.629924 (1 seq.)
>W131231798
AUIS01000042
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
2226
2301
+
Thr
TGT
[ENA]
¡û
Identical group No.642233 (1 seq.)
>W141738817
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
11107
11182
+
Thr
TGT
[ENA]
¡û
Identical group No.676590 (1 seq.)
>W143006017
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
242796
242722
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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