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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GCT
HIT:
38 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8735 (1 seq.)
>W1810587142
QFFY01000002
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
686183
686090
-
Ser
GCT
[ENA]
¡û
Identical group No.9591 (2 seq.)
>W1711574179
MNEX01000159
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
597
690
+
Ser
GCT
[ENA]
¡û
>W1711576120
MNKM01000202
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_65_9 [MNKM]
31805
31898
+
Ser
GCT
[ENA]
¡û
Identical group No.9592 (2 seq.)
>W1711575365
MNIJ01000101
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_58_21 [MNIJ]
3872
3779
-
Ser
GCT
[ENA]
¡û
>W1711575704
MNJG01000214
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
4994
5087
+
Ser
GCT
[ENA]
¡û
Identical group No.10076 (2 seq.)
>W1711575207
MNHS01000062
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
2524
2617
+
Ser
GCT
[ENA]
¡û
>W1711576082
MNKK01000040
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
1084
1177
+
Ser
GCT
[ENA]
¡û
Identical group No.10078 (1 seq.)
>W1711575694
MNJG01000140
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
11820
11913
+
Ser
GCT
[ENA]
¡û
Identical group No.10322 (2 seq.)
>C11123014
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
4089621
4089528
-
Ser
GCT
[Ensembl]
¡û
>W11137286
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
4145904
4145811
-
Ser
GCT
[ENA]
¡û
Identical group No.10511 (2 seq.)
>W1910697414
MEKS01000002
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
48311
48404
+
Ser
GCT
[ENA]
¡û
>W1910697740
MELA01000082
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
42148
42241
+
Ser
GCT
[ENA]
¡û
Identical group No.10519 (1 seq.)
>W1810046975
OKRE01000045
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
2
95
+
Ser
GCT
[ENA]
¡û
Identical group No.10567 (1 seq.)
>W1711391165
MEKJ01000142
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
1201
1110
-
Ser
GCT
[ENA]
¡û
Identical group No.10749 (1 seq.)
>W1910697533
MEKV01000035
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
27499
27406
-
Ser
GCT
[ENA]
¡û
Identical group No.10802 (1 seq.)
>W1710539070
FNVA01000009
Acidobacteriota
Bryocella elongata [FNVA]
383
290
-
Ser
GCT
[ENA]
¡û
Identical group No.10839 (1 seq.)
>W141696028
JMFG01000017
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
27281
27188
-
Ser
GCT
[ENA]
¡û
Identical group No.11361 (1 seq.)
>W1910697469
MEKT01000102
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
6363
6456
+
Ser
GCT
[ENA]
¡û
Identical group No.11401 (1 seq.)
>W1711574700
MNFX01000081
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
13965
13872
-
Ser
GCT
[ENA]
¡û
Identical group No.11531 (1 seq.)
>W1711573477
MNDF01000310
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_56_17 [MNDF]
1580
1673
+
Ser
GCT
[ENA]
¡û
Identical group No.11683 (1 seq.)
>W1711573398
MNDC01000065
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
882
789
-
Ser
GCT
[ENA]
¡û
Identical group No.12064 (1 seq.)
>W1910697885
MELE01000135
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
1852
1945
+
Ser
GCT
[ENA]
¡û
Identical group No.13533 (2 seq.)
>C121011814
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
5075516
5075424
-
Ser
GCT
[Ensembl]
¡û
>W1710534865
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2789813
2789905
+
Ser
GCT
[ENA]
¡û
Identical group No.14435 (3 seq.)
>W10119492
ADVX01000010
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
90274
90366
+
Ser
GCT
[ENA]
¡û
>W11125758
ADVX01000010
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
90274
90366
+
Ser
GCT
[ENA]
¡û
>C121006512
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
5160090
5160182
+
Ser
GCT
[Ensembl]
¡û
Identical group No.14496 (5 seq.)
>W1711502583
MKSV01000006
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
205944
205852
-
Ser
GCT
[ENA]
¡û
>W131216795
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
3647160
3647252
+
Ser
GCT
[ENA]
¡û
>W141817024
JQKI01000005
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
68927
68835
-
Ser
GCT
[ENA]
¡û
>W1911748653
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
1294343
1294251
-
Ser
GCT
[ENA]
¡û
>W1511432676
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
3255204
3255112
-
Ser
GCT
[ENA]
¡û
Identical group No.14906 (1 seq.)
>W1910697621
MEKX01000013
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
23391
23299
-
Ser
GCT
[ENA]
¡û
Identical group No.15018 (1 seq.)
>W1710575766
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
1687665
1687573
-
Ser
GCT
[ENA]
¡û
Identical group No.16015 (1 seq.)
>W141557300
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
2554378
2554286
-
Ser
GCT
[ENA]
¡û
Identical group No.17104 (1 seq.)
>W1910697701
MEKZ01000056
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6756
6664
-
Ser
GCT
[ENA]
¡û
Identical group No.17283 (1 seq.)
>W121017797
AGSB01000065
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
14635
14543
-
Ser
GCT
[ENA]
¡û
Identical group No.17811 (1 seq.)
>W1910697402
MEKR01000153
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
6696
6788
+
Ser
GCT
[ENA]
¡û
Identical group No.17934 (1 seq.)
>W141564307
JIAQ01000032
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
26049
25957
-
Ser
GCT
[ENA]
¡û
Identical group No.18872 (1 seq.)
>W1711391143
MEKI01000142
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
32771
32863
+
Ser
GCT
[ENA]
¡û
Identical group No.19667 (1 seq.)
>W131179166
ARMD01000025
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
72860
72768
-
Ser
GCT
[ENA]
¡û
Identical group No.19675 (1 seq.)
>W141730243
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1508656
1508748
+
Ser
GCT
[ENA]
¡û
Identical group No.26098 (2 seq.)
>C024905
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
2068389
2068480
+
Ser
GCT
[Ensembl]
¡û
>W09102590
AAIA01000001
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
98199
98108
-
Ser
GCT
[ENA]
¡û
Identical group No.28453 (1 seq.)
>W1910548824
FZOU01000004
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
142515
142424
-
Ser
GCT
[ENA]
¡û
Identical group No.42681 (2 seq.)
>W1610083346
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
625340
625250
-
Ser
GCT
[ENA]
¡û
>W1710088363
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
625340
625250
-
Ser
GCT
[ENA]
¡û
Identical group No.65336 (1 seq.)
>W1810047210
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
25867
25956
+
Ser
GCT
[ENA]
¡û
Identical group No.66827 (1 seq.)
>C161037476
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1742183
1742094
-
Ser
GCT
-
¡û
Identical group No.110698 (1 seq.)
>W1711575002
MNGW01000086
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7293
7380
+
Ser
GCT
[ENA]
¡û
Identical group No.324003 (3 seq.)
>W10119499
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
16639
16566
-
Ser
GCT
[ENA]
¡û
>W11125765
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
16639
16566
-
Ser
GCT
[ENA]
¡û
>C121006521
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3387222
3387149
-
Ser
GCT
[Ensembl]
¡û
Identical group No.337221 (1 seq.)
>W1930012629
MEKX01000128
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
25869
25795
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK