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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = TAA
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49408 (1 seq.)
>W1810047074
OMOD01000007
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
80385
80474
+
Leu
TAA
[ENA]
¡û
Identical group No.67057 (1 seq.)
>W131179205
ARME01000011
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
250442
250353
-
Leu
TAA
[ENA]
¡û
Identical group No.77534 (1 seq.)
>W1910697376
MEKQ01000196
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
2228
2316
+
Leu
TAA
[ENA]
¡û
Identical group No.77663 (1 seq.)
>W1710575778
FOZL01000002
Acidobacteriota
Granulicella pectinivorans [FOZL]
69232
69144
-
Leu
TAA
[ENA]
¡û
Identical group No.77701 (1 seq.)
>W1711574175
MNEX01000048
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
927
839
-
Leu
TAA
[ENA]
¡û
Identical group No.78443 (2 seq.)
>W1910697520
MEKU01000079
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
63586
63498
-
Leu
TAA
[ENA]
¡û
>W1910697832
MELD01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
29959
29871
-
Leu
TAA
[ENA]
¡û
Identical group No.79523 (4 seq.)
>W1711574207
MNEY01000135
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
15909
15824
-
Leu
TAA
[ENA]
¡û
>W1711574967
MNGU01000073
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
102
17
-
Leu
TAA
[ENA]
¡û
>W1711575277
MNHX01000172
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_56_11 [MNHX]
2711
2626
-
Leu
TAA
[ENA]
¡û
>W1711576157
MNKP01000136
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
16399
16484
+
Leu
TAA
[ENA]
¡û
Identical group No.79524 (1 seq.)
>W1711575695
MNJG01000148
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
11247
11335
+
Leu
TAA
[ENA]
¡û
Identical group No.79525 (1 seq.)
>W1711575697
MNJG01000172
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
1690
1778
+
Leu
TAA
[ENA]
¡û
Identical group No.79666 (1 seq.)
>W131179244
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
131239
131151
-
Leu
TAA
[ENA]
¡û
Identical group No.80262 (3 seq.)
>W1910697276
MEKM01000057
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
5848
5934
+
Leu
TAA
[ENA]
¡û
>W1910697304
MEKN01000267
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
3240
3326
+
Leu
TAA
[ENA]
¡û
>W1910697326
MEKO01000067
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
3541
3627
+
Leu
TAA
[ENA]
¡û
Identical group No.80263 (1 seq.)
>W1910697345
MEKP01000215
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
5842
5754
-
Leu
TAA
[ENA]
¡û
Identical group No.80518 (1 seq.)
>C000183
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
3720719
3720631
-
Leu
TAA
[Ensembl]
¡û
Identical group No.81095 (1 seq.)
>W1810047032
OKRH01000053
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA6 SbA6 Peat soil MAG SbA6 [OKRH]
7931
7843
-
Leu
TAA
[ENA]
¡û
Identical group No.81243 (1 seq.)
>W1711576126
MNKM01000291
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_65_9 [MNKM]
28108
28196
+
Leu
TAA
[ENA]
¡û
Identical group No.81334 (2 seq.)
>C024938
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
1688431
1688343
-
Leu
TAA
[Ensembl]
¡û
>W09102608
AAIA01000026
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
71406
71494
+
Leu
TAA
[ENA]
¡û
Identical group No.81830 (2 seq.)
>W1910697394
MEKR01000110
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
5845
5933
+
Leu
TAA
[ENA]
¡û
>W1910697719
MEKZ01000350
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
3228
3316
+
Leu
TAA
[ENA]
¡û
Identical group No.82084 (1 seq.)
>W1710539030
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
337029
337117
+
Leu
TAA
[ENA]
¡û
Identical group No.82709 (1 seq.)
>W1711574940
MNGT01000025
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_65_5 [MNGT]
430
342
-
Leu
TAA
[ENA]
¡û
Identical group No.83299 (1 seq.)
>W1810047206
OMOG01000056
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
13354
13266
-
Leu
TAA
[ENA]
¡û
Identical group No.83314 (1 seq.)
>W1810915063
QVQT01000006
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
171128
171040
-
Leu
TAA
[ENA]
¡û
Identical group No.84647 (1 seq.)
>CL170100039
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3962757
3962456
-
Leu
TAA
[Ensembl]
¡û
Identical group No.85073 (1 seq.)
>C161083731
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
5111798
5111710
-
Leu
TAA
-
¡û
Identical group No.86049 (1 seq.)
>W141564049
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
3244283
3244371
+
Leu
TAA
[ENA]
¡û
Identical group No.86364 (1 seq.)
>W1910697888
MELE01000190
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
2271
2359
+
Leu
TAA
[ENA]
¡û
Identical group No.86455 (1 seq.)
>W1711384756
MEDJ01000001
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
254945
255031
+
Leu
TAA
[ENA]
¡û
Identical group No.86504 (1 seq.)
>W131179133
ARMD01000016
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
191324
191412
+
Leu
TAA
[ENA]
¡û
Identical group No.100764 (1 seq.)
>W1711574640
MNFV01000016
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
185
270
+
Leu
TAA
[ENA]
¡û
Identical group No.100784 (1 seq.)
>CL170100030
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
1816768
1817066
+
Leu
TAA
[Ensembl]
¡û
Identical group No.110847 (1 seq.)
>C11106423
CP002514
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
2535678
2535763
+
Leu
TAA
[Ensembl]
¡û
Identical group No.118137 (1 seq.)
>W1810587135
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
1209147
1209061
-
Leu
TAA
[ENA]
¡û
Identical group No.118750 (1 seq.)
>W1710534850
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
381510
381596
+
Leu
TAA
[ENA]
¡û
Identical group No.132822 (2 seq.)
>C121011804
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2495795
2495881
+
Leu
TAA
[Ensembl]
¡û
>C121011807
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2956317
2956403
+
Leu
TAA
[Ensembl]
¡û
Identical group No.134661 (2 seq.)
>W1910697605
MEKW01000059
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
25954
26040
+
Leu
TAA
[ENA]
¡û
>W1910697919
MELF01000036
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
25674
25760
+
Leu
TAA
[ENA]
¡û
Identical group No.142830 (1 seq.)
>W1911748645
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3198333
3198247
-
Leu
TAA
[ENA]
¡û
Identical group No.145070 (1 seq.)
>C161037470
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
5583644
5583730
+
Leu
TAA
-
¡û
Identical group No.146488 (1 seq.)
>W1910548799
FZOU01000001
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
1338868
1338954
+
Leu
TAA
[ENA]
¡û
Identical group No.152420 (2 seq.)
>W1710827101
LLEU01000037
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
20682
20768
+
Leu
TAA
[ENA]
¡û
>W1610690378
LLEU01000037
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
20682
20768
+
Leu
TAA
[ENA]
¡û
Identical group No.152773 (1 seq.)
>W1511591144
LBHJ01000020
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
87089
87003
-
Leu
TAA
[ENA]
¡û
Identical group No.163174 (1 seq.)
>W131221834
AUAU01000013
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
86810
86725
-
Leu
TAA
[ENA]
¡û
Identical group No.170923 (1 seq.)
>W121017790
AGSB01000062
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
64238
64153
-
Leu
TAA
[ENA]
¡û
Identical group No.170974 (1 seq.)
>W141696025
JMFG01000015
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
12219
12134
-
Leu
TAA
[ENA]
¡û
Identical group No.176413 (1 seq.)
>W1711391145
MEKI01000145
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
587
502
-
Leu
TAA
[ENA]
¡û
Identical group No.224162 (1 seq.)
>W1910697681
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
3278
3361
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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