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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = CAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88724 (7 seq.)
>WENV180212315
OBAN01006119
[OBAN] marine metagenome; ENVO 00002150
283
367
+
Ile2
CAT
[ENA]
¢þ
>WENV180370125
OBOH01033070
[OBOH] marine metagenome; ENVO:00002010
393
309
-
Ile2
CAT
[ENA]
¢þ
>WENV180594057
OCOY01021981
[OCOY] marine metagenome; ENVO:00002010
259
175
-
Ile2
CAT
[ENA]
¢þ
>CHL1810002573
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
62624
62708
+
Met
CAT
[ENA]
¡û
>CHL1810002661
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
32505
32591
+
Met
CAT
[ENA]
¡û
>CHL1810008344
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
30564
30478
-
Met
CAT
[ENA]
¡û
>CHL090102726
EF067920
stramenopiles
Phaeodactylum tricornutum
30471
30557
+
Met
CAT
[ENA]
¡û
Identical group No.90110 (10 seq.)
>WENV180210282
OBAL01182705
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
37
123
+
Ile2
CAT
[ENA]
¢þ
>WENV180309971
OBJS01113127
[OBJS] beach sand metagenome; beach sand
94
180
+
Ile2
CAT
[ENA]
¢þ
>WENV181322464
OFKR01014426
[OFKR] marine metagenome; sea ice
217
303
+
Ile2
CAT
[ENA]
¢þ
>WENV181322779
OFKU01017104
[OFKU] marine metagenome; sea ice
134
220
+
Ile2
CAT
[ENA]
¢þ
>WENV183621453
OOFU01001318
[OOFU] marine metagenome; sea ice
298
212
-
Ile2
CAT
[ENA]
¢þ
>WENV183623497
OOGA01005079
[OOGA] marine metagenome; sea ice
242
156
-
Ile2
CAT
[ENA]
¢þ
>WENV183625611
OOGG01003621
[OOGG] marine metagenome; sea ice
574
660
+
Ile2
CAT
[ENA]
¢þ
>CHL1810002634
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
29915
30001
+
Met
CAT
[ENA]
¡û
>CHL1810010623
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
40857
40943
+
Met
CAT
[ENA]
¡û
>CHL1810013697
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
5889
5803
-
Met
CAT
[ENA]
¡û
Identical group No.117618 (1 seq.)
>CHL1810003206
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
58213
58130
-
Met
CAT
[ENA]
¡û
Identical group No.234499 (1 seq.)
>CHL090101377
AY217738
Alveolata
Eimeria tenella
6230
6308
+
Met
CAT
[ENA]
¡û
Identical group No.235590 (2 seq.)
>CHL1810003186
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
62057
62132
+
Met
CAT
[ENA]
¡û
>CHL1810003196
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
81700
81625
-
Met
CAT
[ENA]
¡û
Identical group No.239900 (1 seq.)
>CHL090103191
U87145
Alveolata
Toxoplasma gondii
6385
6462
+
Met
CAT
[ENA]
¡û
Identical group No.253184 (2 seq.)
>CHL090101372
AY217738
Alveolata
Eimeria tenella
2378
2454
+
Met
CAT
[ENA]
¡û
>CHL090101391
AY217738
Alveolata
Eimeria tenella
32344
32268
-
Met
CAT
[ENA]
¡û
Identical group No.288600 (60 seq.)
>WENV180038603
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
41875
41800
-
fMet
CAT
[ENA]
¢þ
>WENV180103689
OAPB01000224
[OAPB] marine metagenome; Sterile flask
1971
1896
-
fMet
CAT
[ENA]
¢þ
>WENV180114885
OAPS01062749
[OAPS] marine metagenome; sea water
142
69
-
fMet
CAT
[ENA]
¢þ
>WENV180294507
OBIY01200284
[OBIY] beach sand metagenome; beach sand
167
92
-
fMet
CAT
[ENA]
¢þ
>WENV180310115
OBJS01231205
[OBJS] beach sand metagenome; beach sand
102
177
+
fMet
CAT
[ENA]
¢þ
>WENV180365423
OBOB01130896
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
265
338
+
fMet
CAT
[ENA]
¢þ
>WENV180388849
OBPI01000461
[OBPI] marine metagenome; Sterile flask
2606
2681
+
fMet
CAT
[ENA]
¢þ
>WENV180589539
OCOS01000008
[OCOS] marine metagenome; Sterile flask
5082
5007
-
fMet
CAT
[ENA]
¢þ
>WENV181304801
OFIC01004629
[OFIC] marine metagenome; sea ice
454
527
+
fMet
CAT
[ENA]
¢þ
>WENV181304926
OFIE01000371
[OFIE] marine metagenome; sea ice
402
477
+
fMet
CAT
[ENA]
¢þ
>WENV181316049
OFJS01000176
[OFJS] marine metagenome; sea ice
1955
1880
-
fMet
CAT
[ENA]
¢þ
>WENV181321603
OFKM01021318
[OFKM] marine metagenome; sea ice
516
441
-
fMet
CAT
[ENA]
¢þ
>WENV181322016
OFKP01000364
[OFKP] marine metagenome; sea ice
735
810
+
fMet
CAT
[ENA]
¢þ
>WENV181322403
OFKR01002552
[OFKR] marine metagenome; sea ice
476
549
+
fMet
CAT
[ENA]
¢þ
>WENV181322635
OFKT01007692
[OFKT] marine metagenome; sea ice
326
401
+
fMet
CAT
[ENA]
¢þ
>WENV181322713
OFKU01000415
[OFKU] marine metagenome; sea ice
670
743
+
fMet
CAT
[ENA]
¢þ
>WENV181322831
OFKV01000320
[OFKV] marine metagenome; sea ice
1954
2027
+
fMet
CAT
[ENA]
¢þ
>WENV181323705
OFKZ01000198
[OFKZ] marine metagenome; sea ice
1775
1850
+
fMet
CAT
[ENA]
¢þ
>WENV181324233
OFLD01000237
[OFLD] marine metagenome; sea ice
1158
1231
+
fMet
CAT
[ENA]
¢þ
>WENV181324841
OFLH01016092
[OFLH] marine metagenome; sea ice
80
155
+
fMet
CAT
[ENA]
¢þ
>WENV181415503
OGCL01012625
[OGCL] hot springs metagenome; Hot spring water
2564
2489
-
fMet
CAT
[ENA]
¢þ
>WENV183615054
OOEA01043474
[OOEA] marine metagenome; sea ice
67
142
+
fMet
CAT
[ENA]
¢þ
>WENV183615281
OOEB01000955
[OOEB] marine metagenome; sea ice
1064
989
-
fMet
CAT
[ENA]
¢þ
>WENV183615922
OOEC01005498
[OOEC] marine metagenome; sea ice
510
583
+
fMet
CAT
[ENA]
¢þ
>WENV183616740
OOEE01000119
[OOEE] marine metagenome; sea ice
9470
9397
-
fMet
CAT
[ENA]
¢þ
>WENV183617483
OOEG01001227
[OOEG] marine metagenome; sea ice
2732
2659
-
fMet
CAT
[ENA]
¢þ
>WENV183621443
OOFU01000905
[OOFU] marine metagenome; sea ice
2919
2992
+
fMet
CAT
[ENA]
¢þ
>WENV183622596
OOFW01000003
[OOFW] marine metagenome; sea ice
2987
2914
-
fMet
CAT
[ENA]
¢þ
>WENV183622973
OOFX01000163
[OOFX] marine metagenome; sea ice
1796
1723
-
fMet
CAT
[ENA]
¢þ
>WENV183624358
OOGD01002514
[OOGD] marine metagenome; sea ice
1990
1917
-
fMet
CAT
[ENA]
¢þ
>WENV183624549
OOGD01037623
[OOGD] marine metagenome; sea ice
575
648
+
fMet
CAT
[ENA]
¢þ
>WENV183624688
OOGE01000895
[OOGE] marine metagenome; sea ice
550
477
-
fMet
CAT
[ENA]
¢þ
>WENV183625583
OOGG01001621
[OOGG] marine metagenome; sea ice
144
219
+
fMet
CAT
[ENA]
¢þ
>WENV183627422
OOGL01003590
[OOGL] marine metagenome; sea ice
2118
2043
-
fMet
CAT
[ENA]
¢þ
>WENV183627974
OOGM01000148
[OOGM] marine metagenome; sea ice
1780
1853
+
fMet
CAT
[ENA]
¢þ
>WENV183628590
OOGO01002524
[OOGO] marine metagenome; sea ice
1868
1941
+
fMet
CAT
[ENA]
¢þ
>WENV170025008
BCQL01180649
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
211
286
+
Met
CAT
[ENA]
¢þ
>WENV170274433
CERM01017452
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1128
1055
-
Met
CAT
[ENA]
¢þ
>WENV170516064
CEWB01078953
[CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
240
313
+
Met
CAT
[ENA]
¢þ
>WENV170639212
JFJP01001700
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
31174
31099
-
Met
CAT
[ENA]
¢þ
>WENV170805707
MDSW01069367
[MDSW] marine metagenome; seawater
10312
10385
+
Met
CAT
[ENA]
¢þ
>WENV170806995
MDSW01090924
[MDSW] marine metagenome; seawater
7111
7184
+
Met
CAT
[ENA]
¢þ
>WENV170817004
MDSX01041960
[MDSX] marine metagenome; seawater
1598
1671
+
Met
CAT
[ENA]
¢þ
>WENV170847223
MDTA01056597
[MDTA] marine metagenome; seawater
3342
3415
+
Met
CAT
[ENA]
¢þ
>CHL1810002649
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
24519
24443
-
Met
CAT
[ENA]
¡û
>CHL1810002675
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
27112
27037
-
Met
CAT
[ENA]
¡û
>CHL1810005296
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
22276
22349
+
Met
CAT
[ENA]
¡û
>CHL1810008325
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
36929
37002
+
Met
CAT
[ENA]
¡û
>CHL1810008370
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
24905
24830
-
Met
CAT
[ENA]
¡û
>CHL1810010641
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
35412
35337
-
Met
CAT
[ENA]
¡û
>CHL1810013668
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
13662
13587
-
Met
CAT
[ENA]
¡û
>CHL1810034272
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
63043
63116
+
Met
CAT
[ENA]
¡û
>CHL1810034279
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
136884
136811
-
Met
CAT
[ENA]
¡û
>CHL1810059316
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
66918
66845
-
Met
CAT
[ENA]
¡û
>CHL1810059426
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
24779
24704
-
Met
CAT
[ENA]
¡û
>CHL1810059450
MG755801
Stramenopiles
Triceratium dubium (MG755801)
57149
57076
-
Met
CAT
[ENA]
¡û
>CHL1810059487
MG755802
Stramenopiles
Rhizosolenia fallax (MG755802)
13821
13748
-
Met
CAT
[ENA]
¡û
>CHL090102742
EF067920
stramenopiles
Phaeodactylum tricornutum
24860
24785
-
Met
CAT
[ENA]
¡û
>CHL090103358
Z67753
stramenopiles
Odontella sinensis
62586
62659
+
Met
CAT
[ENA]
¡û
>ENV09000193
ABSN01026862
Freshwater sediment metagenome lwFormaldehyde_C1
528
603
+
Met
CAT
[ENA]
¡û
Identical group No.297391 (1 seq.)
>CHL1810003208
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
56016
55942
-
Met
CAT
[ENA]
¡û
Identical group No.430610 (2 seq.)
>CHL090103189
U87145
Alveolata
Toxoplasma gondii
2379
2454
+
Met
CAT
[ENA]
¡û
>CHL090103204
U87145
Alveolata
Toxoplasma gondii
32618
32543
-
Met
CAT
[ENA]
¡û
Identical group No.639041 (1 seq.)
>CHL1810046783
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
63856
63784
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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