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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352263 (2 seq.)
>CHL090101386
AY217738
Alveolata
Eimeria tenella
32550
32623
+
Arg
TCT
[ENA]
¡û
>CHL090101396
AY217738
Alveolata
Eimeria tenella
2172
2099
-
Arg
TCT
[ENA]
¡û
Identical group No.467230 (67 seq.)
>WENV180037082
FVAA010587610
[FVAA] soil metagenome; Soil
1
73
+
Arg
TCT
[ENA]
¢þ
>WENV180038606
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
32239
32167
-
Arg
TCT
[ENA]
¢þ
>WENV180040784
LLBZ010014679
[LLBZ] soil metagenome; soil from tomato rhizosphere
14946
15018
+
Arg
TCT
[ENA]
¢þ
>WENV180103770
OAPB01005375
[OAPB] marine metagenome; Sterile flask
533
605
+
Arg
TCT
[ENA]
¢þ
>WENV180365016
OBOB01003039
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
587
661
+
Arg
TCT
[ENA]
¢þ
>WENV180374693
OBOK01006624
[OBOK] marine metagenome; seawater
473
401
-
Arg
TCT
[ENA]
¢þ
>WENV180375291
OBOL01001474
[OBOL] marine metagenome; Surface water
1576
1648
+
Arg
TCT
[ENA]
¢þ
>WENV180376469
OBOM01012139
[OBOM] marine metagenome; Seawater
290
216
-
Arg
TCT
[ENA]
¢þ
>WENV180387975
OBPG01020911
[OBPG] marine metagenome; Sterile flask
266
194
-
Arg
TCT
[ENA]
¢þ
>WENV180388544
OBPH01021083
[OBPH] marine metagenome; Sterile flask
228
300
+
Arg
TCT
[ENA]
¢þ
>WENV180388997
OBPI01014030
[OBPI] marine metagenome; Sterile flask
335
407
+
Arg
TCT
[ENA]
¢þ
>WENV180390017
OBPK01013991
[OBPK] marine metagenome; Sterile flask
548
620
+
Arg
TCT
[ENA]
¢þ
>WENV180394636
OBPS01030132
[OBPS] marine metagenome; ENVO:00002010 seawater
156
84
-
Arg
TCT
[ENA]
¢þ
>WENV180399255
OBQG01042527
[OBQG] marine metagenome; ENV:00002010
125
53
-
Arg
TCT
[ENA]
¢þ
>WENV180589546
OCOS01000010
[OCOS] marine metagenome; Sterile flask
5791
5719
-
Arg
TCT
[ENA]
¢þ
>WENV180650559
OCSY01072847
[OCSY] marine metagenome; 30 L Plastic container
116
188
+
Arg
TCT
[ENA]
¢þ
>WENV181092498
OEBK01003768
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
64
136
+
Arg
TCT
[ENA]
¢þ
>WENV181321538
OFKM01009452
[OFKM] marine metagenome; sea ice
120
192
+
Arg
TCT
[ENA]
¢þ
>WENV181322049
OFKP01001608
[OFKP] marine metagenome; sea ice
1090
1162
+
Arg
TCT
[ENA]
¢þ
>WENV181323761
OFKZ01003331
[OFKZ] marine metagenome; sea ice
601
673
+
Arg
TCT
[ENA]
¢þ
>WENV181323906
OFKZ01028858
[OFKZ] marine metagenome; sea ice
349
276
-
Arg
TCT
[ENA]
¢þ
>WENV181324055
OFLB01000425
[OFLB] marine metagenome; seawater
805
733
-
Arg
TCT
[ENA]
¢þ
>WENV181324764
OFLH01003831
[OFLH] marine metagenome; sea ice
710
636
-
Arg
TCT
[ENA]
¢þ
>WENV181329601
OFLX01026663
[OFLX] seawater metagenome; seawater
99
27
-
Arg
TCT
[ENA]
¢þ
>WENV183060140
OLHW01019825
[OLHW] seawater metagenome; Sea water
131
59
-
Arg
TCT
[ENA]
¢þ
>WENV183614856
OOEA01004162
[OOEA] marine metagenome; sea ice
853
779
-
Arg
TCT
[ENA]
¢þ
>WENV183615432
OOEB01016636
[OOEB] marine metagenome; sea ice
73
1
-
Arg
TCT
[ENA]
¢þ
>WENV183616489
OOED01045426
[OOED] marine metagenome; seawater
99
27
-
Arg
TCT
[ENA]
¢þ
>WENV183617603
OOEG01014289
[OOEG] marine metagenome; sea ice
519
591
+
Arg
TCT
[ENA]
¢þ
>WENV183620944
OOFT01000304
[OOFT] marine metagenome; sea ice
2332
2404
+
Arg
TCT
[ENA]
¢þ
>WENV183621098
OOFT01006318
[OOFT] marine metagenome; sea ice
1298
1225
-
Arg
TCT
[ENA]
¢þ
>WENV183621278
OOFT01036931
[OOFT] marine metagenome; sea ice
623
551
-
Arg
TCT
[ENA]
¢þ
>WENV183623260
OOFX01045240
[OOFX] marine metagenome; sea ice
233
161
-
Arg
TCT
[ENA]
¢þ
>WENV183623338
OOFX01080405
[OOFX] marine metagenome; sea ice
454
382
-
Arg
TCT
[ENA]
¢þ
>WENV183623634
OOGA01023372
[OOGA] marine metagenome; sea ice
327
254
-
Arg
TCT
[ENA]
¢þ
>WENV183624941
OOGE01041437
[OOGE] marine metagenome; sea ice
148
76
-
Arg
TCT
[ENA]
¢þ
>WENV183624956
OOGE01045325
[OOGE] marine metagenome; sea ice
439
367
-
Arg
TCT
[ENA]
¢þ
>WENV183625631
OOGG01004608
[OOGG] marine metagenome; sea ice
330
403
+
Arg
TCT
[ENA]
¢þ
>WENV183625730
OOGG01014742
[OOGG] marine metagenome; sea ice
737
665
-
Arg
TCT
[ENA]
¢þ
>WENV183627555
OOGL01011912
[OOGL] marine metagenome; sea ice
709
781
+
Arg
TCT
[ENA]
¢þ
>WENV183628448
OOGN01053461
[OOGN] marine metagenome; sea ice
221
293
+
Arg
TCT
[ENA]
¢þ
>WENV170506566
CEVW01277827
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
260
334
+
Arg
TCT
[ENA]
¢þ
>WENV170533134
CEWO01099466
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
429
503
+
Arg
TCT
[ENA]
¢þ
>WENV170533172
CEWO01103023
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
386
458
+
Arg
TCT
[ENA]
¢þ
>WENV170567068
FLLY01038718
[FLLY] seawater metagenome; seawater
99
27
-
Arg
TCT
[ENA]
¢þ
>WENV170568727
FLMP01071408
[FLMP] seawater metagenome; seawater
870
798
-
Arg
TCT
[ENA]
¢þ
>WENV170639252
JFJP01001711
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4002
4074
+
Arg
TCT
[ENA]
¢þ
>WENV170813809
MDSW01206453
[MDSW] marine metagenome; seawater
552
626
+
Arg
TCT
[ENA]
¢þ
>WENV170817009
MDSX01041960
[MDSX] marine metagenome; seawater
5077
5149
+
Arg
TCT
[ENA]
¢þ
>CHL1810002657
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
19587
19659
+
Arg
TCT
[ENA]
¡û
>CHL1810005316
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
12792
12719
-
Arg
TCT
[ENA]
¡û
>CHL1810008293
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
6463
6391
-
Arg
TCT
[ENA]
¡û
>CHL1810008317
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
42523
42451
-
Arg
TCT
[ENA]
¡û
>CHL1810008425
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
48130
48056
-
Arg
TCT
[ENA]
¡û
>CHL1810010644
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
25435
25363
-
Arg
TCT
[ENA]
¡û
>CHL1810013633
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
55778
55706
-
Arg
TCT
[ENA]
¡û
>CHL1810013644
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
55265
55337
+
Arg
TCT
[ENA]
¡û
>CHL1810013699
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
8383
8455
+
Arg
TCT
[ENA]
¡û
>CHL1810059290
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
42615
42543
-
Arg
TCT
[ENA]
¡û
>CHL1810059301
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
53284
53356
+
Arg
TCT
[ENA]
¡û
>CHL1810059349
MG755796
Stramenopiles
Guinardia striata (MG755796)
5675
5603
-
Arg
TCT
[ENA]
¡û
>CHL1810059400
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
43093
43021
-
Arg
TCT
[ENA]
¡û
>CHL1810059429
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
16680
16608
-
Arg
TCT
[ENA]
¡û
>CHL1810059437
MG755801
Stramenopiles
Triceratium dubium (MG755801)
54859
54931
+
Arg
TCT
[ENA]
¡û
>CHL1810059463
MG755802
Stramenopiles
Rhizosolenia fallax (MG755802)
56277
56349
+
Arg
TCT
[ENA]
¡û
>CHL090102745
EF067920
stramenopiles
Phaeodactylum tricornutum
16962
16890
-
Arg
TCT
[ENA]
¡û
>CHL090103372
Z67753
stramenopiles
Odontella sinensis
64846
64773
-
Arg
TCT
[ENA]
¡û
Identical group No.480778 (2 seq.)
>CHL1810003193
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
84802
84874
+
Arg
TCT
[ENA]
¡û
>CHL1810003203
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
58955
58883
-
Arg
TCT
[ENA]
¡û
Identical group No.492373 (3 seq.)
>WENV180015595
FQKF010951464
[FQKF] soil metagenome; Soil
403
331
-
Arg
TCT
[ENA]
¢þ
>CHL1810002630
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
16905
16977
+
Arg
TCT
[ENA]
¡û
>CHL1810008373
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
16888
16816
-
Arg
TCT
[ENA]
¡û
Identical group No.629583 (2 seq.)
>CHL090103199
U87145
Alveolata
Toxoplasma gondii
32832
32904
+
Arg
TCT
[ENA]
¡û
>CHL090103207
U87145
Alveolata
Toxoplasma gondii
2165
2093
-
Arg
TCT
[ENA]
¡û
Identical group No.833182 (1 seq.)
>CHL1810046776
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
36143
36215
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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