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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = CAA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104514 (1 seq.)
>C161000107
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
783612
783526
-
Leu
CAA
[Ensembl]
¡û
Identical group No.111722 (1 seq.)
>C000034
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
844230
844143
-
Leu
CAA
[Ensembl]
¡û
Identical group No.115613 (3 seq.)
>WENV181228990
OFEJ01000027
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
8804
8721
-
Leu
CAA
[ENA]
¢þ
>WENV181409032
OGCH01037472
[OGCH] hot springs metagenome; hot springs
608
525
-
Leu
CAA
[ENA]
¢þ
>W141730210
JNIE01000004
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
118727
118810
+
Leu
CAA
[ENA]
¡û
Identical group No.118935 (1 seq.)
>W1711589793
MOEN01000023
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
22296
22210
-
Leu
CAA
[ENA]
¡û
Identical group No.123778 (3 seq.)
>W1911493344
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
177814
177730
-
Leu
CAA
[ENA]
¡û
>C10107875
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
1059212
1059129
-
Leu
CAA
-
¡û
>C11111348
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
1059203
1059120
-
Leu
CAA
-
¡û
Identical group No.130196 (1 seq.)
>W08004343
ABHJ01000010
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
44609
44526
-
Leu
CAA
[ENA]
¡û
Identical group No.130244 (6 seq.)
>C08010681
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
700032
700117
+
Leu
CAA
[Ensembl]
¡û
>W141557051
JHUV01000008
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
264493
264576
+
Leu
CAA
[ENA]
¡û
>W09107715
ABLS01000003
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
17094
17179
+
Leu
CAA
[ENA]
¡û
>C09109121
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
545704
545621
-
Leu
CAA
[Ensembl]
¡û
>ENV09004170
ADKJ01000722
Hot springs metagenome ctg_1106445192081
2291
2376
+
Leu
CAA
[ENA]
¡û
>ENV09004221
ADKK01000200
Hot springs metagenome ctg_1106445177583
4300
4215
-
Leu
CAA
[ENA]
¡û
Identical group No.130382 (2 seq.)
>W141734153
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
803817
803900
+
Leu
CAA
[ENA]
¡û
>W141734245
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1430676
1430759
+
Leu
CAA
[ENA]
¡û
Identical group No.133520 (3 seq.)
>WENV181405021
OGCB01006270
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
438
521
+
Leu
CAA
[ENA]
¢þ
>WENV181407623
OGCG01055554
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
141
58
-
Leu
CAA
[ENA]
¢þ
>C141011685
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1256313
1256396
+
Leu
CAA
-
¡û
Identical group No.134605 (1 seq.)
>W1910547772
FZOB01000002
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
71771
71857
+
Leu
CAA
[ENA]
¡û
Identical group No.137313 (2 seq.)
>W131217740
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
696528
696614
+
Leu
CAA
[ENA]
¡û
>C11107382
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
488867
488953
+
Leu
CAA
[Ensembl]
¡û
Identical group No.138703 (1 seq.)
>W1911493101
OBEI01000002
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
265395
265480
+
Leu
CAA
[ENA]
¡û
Identical group No.143248 (1 seq.)
>C09108610
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
464998
464912
-
Leu
CAA
[Ensembl]
¡û
Identical group No.145397 (1 seq.)
>C10113024
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
512133
512216
+
Leu
CAA
[Ensembl]
¡û
Identical group No.152677 (1 seq.)
>C11122326
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1197901
1197987
+
Leu
CAA
[Ensembl]
¡û
Identical group No.154722 (8 seq.)
>C08005591
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1281440
1281358
-
Leu
CAA
[Ensembl]
¡û
>W09107148
ABFI01000045
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
10120
10038
-
Leu
CAA
[ENA]
¡û
>C151003662
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1270946
1270864
-
Leu
CAA
[Ensembl]
¡û
>C151003706
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1270816
1270734
-
Leu
CAA
[Ensembl]
¡û
>W10115211
ADJO01000009
Aquificota
Hydrogenobaculum sp. SN [ADJO]
25756
25674
-
Leu
CAA
[ENA]
¡û
>W11118797
ADJO01000009
Aquificota
Hydrogenobaculum sp. SN [ADJO]
25756
25674
-
Leu
CAA
[ENA]
¡û
>C131013402
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1271141
1271059
-
Leu
CAA
[Ensembl]
¡û
>C131013713
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1271103
1271021
-
Leu
CAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK