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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = TTC
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235405 (5 seq.)
>WENV181229022
OFEJ01000072
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
8153
8229
+
Glu
TTC
[ENA]
¢þ
>WENV181406082
OGCE01031540
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
168
245
+
Glu
TTC
[ENA]
¢þ
>WENV181408258
OGCH01001227
[OGCH] hot springs metagenome; hot springs
9273
9198
-
Glu
TTC
[ENA]
¢þ
>W141730196
JNIE01000002
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
181553
181628
+
Glu
TTC
[ENA]
¡û
>C10113030
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
1300644
1300720
+
Glu
TTC
[Ensembl]
¡û
Identical group No.236334 (2 seq.)
>C10107871
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
1162607
1162531
-
Glu
TTC
-
¡û
>C11111344
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
1162466
1162390
-
Glu
TTC
-
¡û
Identical group No.239279 (1 seq.)
>W1911493343
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
283687
283611
-
Glu
TTC
[ENA]
¡û
Identical group No.240497 (1 seq.)
>C141011702
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
779559
779483
-
Glu
TTC
-
¡û
Identical group No.241802 (9 seq.)
>WENV181228564
OFEH01000224
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
15703
15780
+
Glu
TTC
[ENA]
¢þ
>C08005595
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1022812
1022738
-
Glu
TTC
[Ensembl]
¡û
>W09107157
ABFI01000063
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
4644
4567
-
Glu
TTC
[ENA]
¡û
>C151003653
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1038655
1038732
+
Glu
TTC
[Ensembl]
¡û
>C151003697
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1038767
1038844
+
Glu
TTC
[Ensembl]
¡û
>W10115179
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
184916
184839
-
Glu
TTC
[ENA]
¡û
>W11118765
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
184916
184839
-
Glu
TTC
[ENA]
¡û
>C131013393
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1038844
1038921
+
Glu
TTC
[Ensembl]
¡û
>C131013704
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1038812
1038889
+
Glu
TTC
[Ensembl]
¡û
Identical group No.241803 (4 seq.)
>C08010714
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
52341
52265
-
Glu
TTC
[Ensembl]
¡û
>W09107719
ABLS01000004
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
12295
12371
+
Glu
TTC
[ENA]
¡û
>W09114576
ABZS01000190
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
545
621
+
Glu
TTC
[ENA]
¡û
>ENV09004203
ADKJ01001595
Hot springs metagenome ctg_1106445192081
4875
4799
-
Glu
TTC
[ENA]
¡û
Identical group No.245037 (11 seq.)
>W131217754
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1389244
1389167
-
Glu
TTC
[ENA]
¡û
>W131217760
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1040194
1040117
-
Glu
TTC
[ENA]
¡û
>W1711589780
MOEN01000012
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
22587
22664
+
Glu
TTC
[ENA]
¡û
>W1711589792
MOEN01000020
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
11044
11121
+
Glu
TTC
[ENA]
¡û
>WENV180288160
OBIL01066732
[OBIL] metagenome; hydrothermal vent
78
1
-
Glu
TTC
[ENA]
¢þ
>WENV181210269
OFBG01019256
[OFBG] metagenome; hydrothermal vent
282
359
+
Glu
TTC
[ENA]
¢þ
>WENV181212814
OFBU01000191
[OFBU] metagenome; hydrothermal vent
4331
4408
+
Glu
TTC
[ENA]
¢þ
>W1910547782
FZOB01000005
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
49232
49309
+
Glu
TTC
[ENA]
¡û
>W1910547798
FZOB01000011
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
53317
53240
-
Glu
TTC
[ENA]
¡û
>C11107375
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
310764
310841
+
Glu
TTC
[Ensembl]
¡û
>C11122355
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
663101
663024
-
Glu
TTC
[Ensembl]
¡û
Identical group No.245451 (10 seq.)
>W08004356
ABHJ01000168
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
888
963
+
Glu
TTC
[ENA]
¡û
>W141734155
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
804149
804223
+
Glu
TTC
[ENA]
¡û
>W141734158
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
868587
868513
-
Glu
TTC
[ENA]
¡û
>W141734243
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1258040
1258114
+
Glu
TTC
[ENA]
¡û
>W141734256
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1796938
1797012
+
Glu
TTC
[ENA]
¡û
>C09108586
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1120130
1120206
+
Glu
TTC
[Ensembl]
¡û
>C09108613
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
318030
317954
-
Glu
TTC
[Ensembl]
¡û
>W1911493117
OBEI01000011
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
32131
32057
-
Glu
TTC
[ENA]
¡û
>W1911493119
OBEI01000012
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
227
303
+
Glu
TTC
[ENA]
¡û
>ENV09001784
ACQI01005980
Hydrothermal vent metagenome LCHCB.C1
358
281
-
Glu
TTC
[ENA]
¡û
Identical group No.251575 (5 seq.)
>WENV180634741
OCRB01089777
[OCRB] metagenome; diffuse fluid
162
85
-
Glu
TTC
[ENA]
¢þ
>WENV181210566
OFBH01011186
[OFBH] metagenome; hydrothermal vent
336
413
+
Glu
TTC
[ENA]
¢þ
>WENV181226591
OFDL01011777
[OFDL] metagenome; hydrothermal vent
58
135
+
Glu
TTC
[ENA]
¢þ
>WENV181228270
OFDO01006924
[OFDO] metagenome; hydrothermal vent
879
802
-
Glu
TTC
[ENA]
¢þ
>C11122362
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
266238
266161
-
Glu
TTC
[Ensembl]
¡û
Identical group No.253154 (1 seq.)
>W08004333
ABHJ01000005
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
192693
192770
+
Glu
TTC
[ENA]
¡û
Identical group No.258360 (2 seq.)
>WENV180634894
OCRB01149272
[OCRB] metagenome; diffuse fluid
45
122
+
Glu
TTC
[ENA]
¢þ
>C11107373
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
214590
214667
+
Glu
TTC
[Ensembl]
¡û
Identical group No.261074 (1 seq.)
>C161000097
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1398611
1398536
-
Glu
TTC
[Ensembl]
¡û
Identical group No.264325 (2 seq.)
>C09109109
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
1423550
1423626
+
Glu
TTC
[Ensembl]
¡û
>C09109120
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
703858
703782
-
Glu
TTC
[Ensembl]
¡û
Identical group No.268704 (3 seq.)
>C08010683
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
700560
700636
+
Glu
TTC
[Ensembl]
¡û
>W09107717
ABLS01000003
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
17622
17698
+
Glu
TTC
[ENA]
¡û
>ENV09004231
ADKK01000224
Hot springs metagenome ctg_1106445177583
1084
1159
+
Glu
TTC
[ENA]
¡û
Identical group No.269679 (2 seq.)
>W141557050
JHUV01000008
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
103603
103680
+
Glu
TTC
[ENA]
¡û
>W141557069
JHUV01000009
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
187033
186957
-
Glu
TTC
[ENA]
¡û
Identical group No.269686 (1 seq.)
>C000023
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
1453112
1453035
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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